Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 C1orf158-201ENST00000376210 695 ntTSL 3 BASIC17.02■□□□□ 0.32
SHANK3Q9BYB0 CD33-202ENST00000391796 1089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
SHANK3Q9BYB0 FTH1P19-201ENST00000402402 528 ntBASIC17.02■□□□□ 0.32
SHANK3Q9BYB0 GOSR1-205ENST00000467337 1011 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SHANK3Q9BYB0 AC092435.2-201ENST00000515530 524 ntTSL 4 BASIC17.02■□□□□ 0.32
SHANK3Q9BYB0 SELENOK-205ENST00000541726 814 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.32
SHANK3Q9BYB0 AC027279.2-201ENST00000561938 793 ntTSL 5 BASIC17.02■□□□□ 0.32
SHANK3Q9BYB0 IGHV3OR16-11-201ENST00000565524 349 ntBASIC17.02■□□□□ 0.32
SHANK3Q9BYB0 AC003965.2-201ENST00000577140 265 ntTSL 3 BASIC17.02■□□□□ 0.32
SHANK3Q9BYB0 Metazoa_SRP.198-201ENST00000610617 323 ntBASIC17.02■□□□□ 0.32
SHANK3Q9BYB0 HIST1H4K-201ENST00000611927 312 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
SHANK3Q9BYB0 C12orf45-205ENST00000622317 1078 ntTSL 5 BASIC17.02■□□□□ 0.32
SHANK3Q9BYB0 AC245369.3-201ENST00000624687 411 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
SHANK3Q9BYB0 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SHANK3Q9BYB0 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.02■□□□□ 0.32
SHANK3Q9BYB0 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SHANK3Q9BYB0 CDCA7L-202ENST00000373934 1830 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
SHANK3Q9BYB0 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SHANK3Q9BYB0 FAM9A-201ENST00000381003 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SHANK3Q9BYB0 TRIM60-201ENST00000341062 1867 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
SHANK3Q9BYB0 KIR3DL1-203ENST00000391728 1871 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
SHANK3Q9BYB0 ADPRH-202ENST00000465513 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SHANK3Q9BYB0 TFG-202ENST00000418917 1716 ntAPPRIS ALT1 TSL 3 BASIC17.02■□□□□ 0.31
SHANK3Q9BYB0 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SHANK3Q9BYB0 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC17.02■□□□□ 0.31
SHANK3Q9BYB0 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
SHANK3Q9BYB0 CREB5-203ENST00000396299 2294 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
SHANK3Q9BYB0 ARMC7-201ENST00000245543 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SHANK3Q9BYB0 LINC00846-201ENST00000334165 1778 ntTSL 2 BASIC17.02■□□□□ 0.31
SHANK3Q9BYB0 SNCAIP-222ENST00000542191 2729 ntTSL 5 BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 LINC00544-201ENST00000400540 1031 ntTSL 5 BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 AL512422.2-201ENST00000426453 551 ntTSL 2 BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 AC099681.2-201ENST00000449899 543 ntTSL 4 BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 SEMA6A-AS1-206ENST00000514214 782 ntTSL 3 BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 AC246817.2-204ENST00000517984 562 ntTSL 4 BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 TMEM253-206ENST00000556585 1236 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 AC003688.2-201ENST00000576271 415 ntTSL 3 BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 CHMP4C-201ENST00000297265 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 AC069061.4-201ENST00000581294 1347 ntBASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 AC135782.3-201ENST00000562782 2105 ntBASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 NFATC4-212ENST00000554473 1382 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 TAF7L-202ENST00000356784 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 CYP20A1-210ENST00000613925 1986 ntTSL 2 BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 PECR-201ENST00000265322 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 CXorf40B-203ENST00000370406 1653 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 MAL-202ENST00000349807 705 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 THYN1-202ENST00000352327 835 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 ALKBH2-202ENST00000429722 1159 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 AC069277.1-201ENST00000433639 1083 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 AC012066.1-201ENST00000439252 694 ntBASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 ATP2A2-211ENST00000552636 529 ntTSL 4 BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 AC032044.1-201ENST00000570924 570 ntTSL 4 BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 CLDN6-203ENST00000572154 461 ntTSL 3 BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 ZG16B-204ENST00000572863 716 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 RN7SL750P-201ENST00000582814 238 ntBASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 AC116036.2-201ENST00000607592 462 ntBASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 C2orf27AP1-201ENST00000618128 586 ntBASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 CICP9-201ENST00000444451 1913 ntBASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC17.01■□□□□ 0.31
SHANK3Q9BYB0 YAP1P1-201ENST00000401504 1393 ntBASIC17■□□□□ 0.31
SHANK3Q9BYB0 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SHANK3Q9BYB0 ALOX15P2-201ENST00000340858 1897 ntBASIC17■□□□□ 0.31
SHANK3Q9BYB0 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC17■□□□□ 0.31
SHANK3Q9BYB0 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SHANK3Q9BYB0 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
SHANK3Q9BYB0 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
SHANK3Q9BYB0 MIPEPP1-201ENST00000413533 2027 ntBASIC17■□□□□ 0.31
SHANK3Q9BYB0 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SHANK3Q9BYB0 SPINK2-201ENST00000248701 613 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
SHANK3Q9BYB0 OAZ3-201ENST00000321531 851 ntTSL 5 BASIC17■□□□□ 0.31
SHANK3Q9BYB0 CAV2-202ENST00000343213 776 ntTSL 1 (best) BASIC17■□□□□ 0.31
SHANK3Q9BYB0 COX4I2-201ENST00000376075 693 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SHANK3Q9BYB0 APTX-203ENST00000379813 1121 ntTSL 5 BASIC17■□□□□ 0.31
SHANK3Q9BYB0 AL078621.2-201ENST00000419351 698 ntBASIC17■□□□□ 0.31
SHANK3Q9BYB0 SMIM26-202ENST00000435844 575 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
SHANK3Q9BYB0 AC098934.2-202ENST00000438944 1033 ntBASIC17■□□□□ 0.31
SHANK3Q9BYB0 P2RX6P-202ENST00000450626 357 ntBASIC17■□□□□ 0.31
SHANK3Q9BYB0 APTX-220ENST00000476858 1068 ntTSL 1 (best) BASIC17■□□□□ 0.31
SHANK3Q9BYB0 VTI1BP1-201ENST00000486325 700 ntBASIC17■□□□□ 0.31
SHANK3Q9BYB0 VEGFA-225ENST00000523950 954 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
SHANK3Q9BYB0 AC079601.2-201ENST00000547729 775 ntBASIC17■□□□□ 0.31
SHANK3Q9BYB0 PSME3-213ENST00000592169 826 ntTSL 3 BASIC17■□□□□ 0.31
SHANK3Q9BYB0 DUSP22-206ENST00000603453 804 ntTSL 4 BASIC17■□□□□ 0.31
SHANK3Q9BYB0 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms