Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIG3P49916 ERAP1-201ENST00000296754 5495 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LIG3P49916 KCNS2-202ENST00000521839 4340 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
LIG3P49916 ACSL4-202ENST00000348502 5032 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIG3P49916 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC14.65□□□□□ -0.06
LIG3P49916 CREBL2-201ENST00000228865 3754 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIG3P49916 AOC3-201ENST00000308423 4026 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIG3P49916 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIG3P49916 SLC8A3-205ENST00000394330 2622 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LIG3P49916 FGFR1-207ENST00000397103 2953 ntTSL 5 BASIC14.64□□□□□ -0.07
LIG3P49916 AOC4P-203ENST00000566825 2289 ntBASIC14.64□□□□□ -0.07
LIG3P49916 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
LIG3P49916 MED24-204ENST00000394128 3479 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIG3P49916 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LIG3P49916 OFD1-203ENST00000380567 3736 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
LIG3P49916 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC14.64□□□□□ -0.07
LIG3P49916 AGAP5-202ENST00000443782 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIG3P49916 AGAP4-203ENST00000448048 2439 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIG3P49916 SNX1-201ENST00000261889 3373 ntTSL 2 BASIC14.64□□□□□ -0.07
LIG3P49916 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC14.64□□□□□ -0.07
LIG3P49916 ZBTB44-202ENST00000397753 3951 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
LIG3P49916 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LIG3P49916 POU2F2-216ENST00000560558 3282 ntTSL 5 BASIC14.64□□□□□ -0.07
LIG3P49916 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC14.64□□□□□ -0.07
LIG3P49916 FAM90A7P-201ENST00000382628 1395 ntBASIC14.64□□□□□ -0.07
LIG3P49916 FAM90A23P-201ENST00000400136 1395 ntBASIC14.64□□□□□ -0.07
LIG3P49916 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
LIG3P49916 GRM2-202ENST00000395052 3151 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
LIG3P49916 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIG3P49916 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC14.64□□□□□ -0.07
LIG3P49916 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIG3P49916 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIG3P49916 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
LIG3P49916 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LIG3P49916 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC14.64□□□□□ -0.07
LIG3P49916 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LIG3P49916 AC005077.2-201ENST00000449786 690 ntBASIC14.64□□□□□ -0.07
LIG3P49916 REEP1-202ENST00000453231 940 ntTSL 2 BASIC14.64□□□□□ -0.07
LIG3P49916 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIG3P49916 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC14.64□□□□□ -0.07
LIG3P49916 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC14.64□□□□□ -0.07
LIG3P49916 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC14.64□□□□□ -0.07
LIG3P49916 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC14.64□□□□□ -0.07
LIG3P49916 RBM8B-201ENST00000555532 525 ntBASIC14.64□□□□□ -0.07
LIG3P49916 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC14.64□□□□□ -0.07
LIG3P49916 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
LIG3P49916 CDK2-201ENST00000266970 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIG3P49916 TOX2-203ENST00000372999 2519 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LIG3P49916 DHX34-201ENST00000328771 4372 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
LIG3P49916 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIG3P49916 ABCB9-201ENST00000280560 3517 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIG3P49916 WDR60-202ENST00000407559 3769 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIG3P49916 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIG3P49916 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LIG3P49916 AC144522.1-201ENST00000625111 1658 ntBASIC14.64□□□□□ -0.07
LIG3P49916 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC14.64□□□□□ -0.07
LIG3P49916 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC14.64□□□□□ -0.07
LIG3P49916 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC14.64□□□□□ -0.07
LIG3P49916 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LIG3P49916 DNMT3B-205ENST00000443239 2674 ntTSL 2 BASIC14.64□□□□□ -0.07
LIG3P49916 AC009501.1-201ENST00000429952 2069 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LIG3P49916 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIG3P49916 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIG3P49916 GRIP2-206ENST00000637182 3727 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
LIG3P49916 ASB3-204ENST00000406687 2205 ntTSL 2 BASIC14.64□□□□□ -0.07
LIG3P49916 ZMPSTE24-201ENST00000372759 3108 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LIG3P49916 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LIG3P49916 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC14.63□□□□□ -0.07
LIG3P49916 AC092117.1-201ENST00000621230 3250 ntBASIC14.63□□□□□ -0.07
LIG3P49916 LINC00926-202ENST00000502027 2141 ntTSL 2 BASIC14.63□□□□□ -0.07
LIG3P49916 COL6A2-204ENST00000409416 3430 ntTSL 5 BASIC14.63□□□□□ -0.07
LIG3P49916 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
LIG3P49916 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
LIG3P49916 ANXA11-201ENST00000265447 2526 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
LIG3P49916 PPFIA4-210ENST00000599966 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
LIG3P49916 LINC01993-201ENST00000374945 2934 ntTSL 2 BASIC14.63□□□□□ -0.07
LIG3P49916 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LIG3P49916 ANO6-203ENST00000425752 3558 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
LIG3P49916 AGL-203ENST00000361915 7368 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LIG3P49916 NAA15-202ENST00000398947 6072 ntAPPRIS ALT1 TSL 5 BASIC14.63□□□□□ -0.07
LIG3P49916 KLF7-204ENST00000423015 1788 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LIG3P49916 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LIG3P49916 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
LIG3P49916 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
LIG3P49916 NEK4-207ENST00000535191 2452 ntTSL 2 BASIC14.63□□□□□ -0.07
LIG3P49916 TBC1D3P2-203ENST00000581291 2088 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LIG3P49916 AL355102.3-201ENST00000554299 1678 ntBASIC14.63□□□□□ -0.07
LIG3P49916 SDCCAG3P2-201ENST00000326105 1023 ntBASIC14.63□□□□□ -0.07
LIG3P49916 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LIG3P49916 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LIG3P49916 DEF8-202ENST00000418391 852 ntTSL 2 BASIC14.63□□□□□ -0.07
LIG3P49916 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC14.63□□□□□ -0.07
LIG3P49916 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC14.63□□□□□ -0.07
LIG3P49916 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LIG3P49916 AC011742.3-201ENST00000439053 820 ntBASIC14.63□□□□□ -0.07
LIG3P49916 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC14.63□□□□□ -0.07
LIG3P49916 MARK2P5-201ENST00000507649 634 ntBASIC14.63□□□□□ -0.07
LIG3P49916 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC14.63□□□□□ -0.07
LIG3P49916 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC14.63□□□□□ -0.07
LIG3P49916 SYT17-208ENST00000568433 812 ntTSL 3 BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms