Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 DHX16-201ENST00000376437 1933 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 AC092573.1-201ENST00000433054 884 ntBASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 DPY19L2P5-201ENST00000456300 331 ntBASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 AC095350.1-204ENST00000585405 616 ntTSL 5 BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 AC073911.3-201ENST00000624401 631 ntBASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 IL9RP3-201ENST00000442856 1674 ntBASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 TARS2-205ENST00000438568 2188 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 C17orf80-202ENST00000268942 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 UBE2A-206ENST00000625938 1381 ntTSL 2 BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 AC107918.4-201ENST00000641966 3141 ntBASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 MEIS2-215ENST00000559561 1442 ntAPPRIS ALT1 TSL 5 BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 IKZF1-206ENST00000359197 3487 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 ZNF426-204ENST00000593003 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 AC073210.1-201ENST00000414799 232 ntBASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 AL121656.1-201ENST00000440786 482 ntTSL 5 BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 RN7SL556P-201ENST00000582856 298 ntBASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 AC068675.1-201ENST00000588996 561 ntTSL 4 BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 AP001527.2-201ENST00000614441 631 ntBASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 RPA2-203ENST00000373912 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 LAS1L-202ENST00000374807 2386 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SHROOM3Q8TF72 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 KRT26-201ENST00000335552 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 METTL12-203ENST00000532971 2037 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 NXPE3-201ENST00000273347 3941 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 ZDHHC11-201ENST00000283441 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 CAMKV-215ENST00000488336 2905 ntTSL 2 BASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 TSPAN31-201ENST00000257910 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 MUC1-225ENST00000612778 1836 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 FAM86C1-202ENST00000359244 2110 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 PPIL3-205ENST00000409449 756 ntTSL 5 BASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 HIST2H2BA-201ENST00000412169 381 ntBASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 AL589935.1-203ENST00000412751 465 ntTSL 3 BASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 OR5BD1P-201ENST00000532527 817 ntBASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 AC027139.1-201ENST00000565286 951 ntBASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 NDRG4-236ENST00000566192 3265 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SHROOM3Q8TF72 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC14.02□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms