Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC14.09□□□□□ -0.15
USP39Q53GS9 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
USP39Q53GS9 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
USP39Q53GS9 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
USP39Q53GS9 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
USP39Q53GS9 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC14.09□□□□□ -0.15
USP39Q53GS9 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
USP39Q53GS9 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
USP39Q53GS9 TP73-201ENST00000346387 4854 ntTSL 5 BASIC14.08□□□□□ -0.15
USP39Q53GS9 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC14.08□□□□□ -0.15
USP39Q53GS9 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
USP39Q53GS9 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
USP39Q53GS9 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC14.08□□□□□ -0.16
USP39Q53GS9 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP39Q53GS9 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP39Q53GS9 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC14.08□□□□□ -0.16
USP39Q53GS9 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
USP39Q53GS9 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP39Q53GS9 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
USP39Q53GS9 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP39Q53GS9 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP39Q53GS9 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP39Q53GS9 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
USP39Q53GS9 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
USP39Q53GS9 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP39Q53GS9 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP39Q53GS9 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP39Q53GS9 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP39Q53GS9 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
USP39Q53GS9 OR2W2P-201ENST00000406313 909 ntBASIC14.08□□□□□ -0.16
USP39Q53GS9 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
USP39Q53GS9 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
USP39Q53GS9 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC14.08□□□□□ -0.16
USP39Q53GS9 AL451000.1-201ENST00000451300 1186 ntBASIC14.08□□□□□ -0.16
USP39Q53GS9 AC093300.1-201ENST00000510368 1201 ntBASIC14.08□□□□□ -0.16
USP39Q53GS9 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC14.08□□□□□ -0.16
USP39Q53GS9 CASP3-205ENST00000517513 964 ntTSL 5 BASIC14.08□□□□□ -0.16
USP39Q53GS9 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC14.08□□□□□ -0.16
USP39Q53GS9 AL132994.1-201ENST00000554098 400 ntBASIC14.08□□□□□ -0.16
USP39Q53GS9 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC14.08□□□□□ -0.16
USP39Q53GS9 SRP14-204ENST00000558720 780 ntTSL 2 BASIC14.08□□□□□ -0.16
USP39Q53GS9 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC14.08□□□□□ -0.16
USP39Q53GS9 NT5C-204ENST00000578337 582 ntTSL 2 BASIC14.08□□□□□ -0.16
USP39Q53GS9 COQ4-204ENST00000608951 781 ntTSL 2 BASIC14.08□□□□□ -0.16
USP39Q53GS9 TP53-221ENST00000615910 1149 ntTSL 5 BASIC14.08□□□□□ -0.16
USP39Q53GS9 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC14.08□□□□□ -0.16
USP39Q53GS9 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC14.08□□□□□ -0.16
USP39Q53GS9 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP39Q53GS9 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
USP39Q53GS9 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP39Q53GS9 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP39Q53GS9 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
USP39Q53GS9 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
USP39Q53GS9 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
USP39Q53GS9 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC14.08□□□□□ -0.16
USP39Q53GS9 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP39Q53GS9 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC14.08□□□□□ -0.16
USP39Q53GS9 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
USP39Q53GS9 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
USP39Q53GS9 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
USP39Q53GS9 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP39Q53GS9 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP39Q53GS9 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC14.08□□□□□ -0.16
USP39Q53GS9 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
USP39Q53GS9 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
USP39Q53GS9 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC14.08□□□□□ -0.16
USP39Q53GS9 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC14.07□□□□□ -0.16
USP39Q53GS9 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP39Q53GS9 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC14.07□□□□□ -0.16
USP39Q53GS9 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP39Q53GS9 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
USP39Q53GS9 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
USP39Q53GS9 AC007952.5-201ENST00000572818 1486 ntBASIC14.07□□□□□ -0.16
USP39Q53GS9 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
USP39Q53GS9 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
USP39Q53GS9 AC090643.2-201ENST00000623442 2029 ntBASIC14.07□□□□□ -0.16
USP39Q53GS9 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP39Q53GS9 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
USP39Q53GS9 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP39Q53GS9 SSR4-202ENST00000370085 526 ntTSL 2 BASIC14.07□□□□□ -0.16
USP39Q53GS9 ABCD1P4-201ENST00000399687 604 ntBASIC14.07□□□□□ -0.16
USP39Q53GS9 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC14.07□□□□□ -0.16
USP39Q53GS9 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC14.07□□□□□ -0.16
USP39Q53GS9 AP000244.1-201ENST00000424582 201 ntBASIC14.07□□□□□ -0.16
USP39Q53GS9 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
USP39Q53GS9 AL512599.1-201ENST00000430724 685 ntBASIC14.07□□□□□ -0.16
USP39Q53GS9 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC14.07□□□□□ -0.16
USP39Q53GS9 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP39Q53GS9 AC106047.2-201ENST00000511723 743 ntBASIC14.07□□□□□ -0.16
USP39Q53GS9 GDNF-207ENST00000515058 764 ntTSL 5 BASIC14.07□□□□□ -0.16
USP39Q53GS9 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
USP39Q53GS9 KRT18P37-201ENST00000520711 1282 ntBASIC14.07□□□□□ -0.16
USP39Q53GS9 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
USP39Q53GS9 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC14.07□□□□□ -0.16
USP39Q53GS9 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC14.07□□□□□ -0.16
USP39Q53GS9 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
USP39Q53GS9 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC14.07□□□□□ -0.16
USP39Q53GS9 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
USP39Q53GS9 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC14.07□□□□□ -0.16
USP39Q53GS9 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms