Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL445250.1-201ENST00000641671 2259 ntBASIC15.73■□□□□ 0.11
SMARCA1P28370 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
SMARCA1P28370 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
SMARCA1P28370 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
SMARCA1P28370 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SMARCA1P28370 ZSCAN5B-202ENST00000586855 2059 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
SMARCA1P28370 CPEB1-213ENST00000617462 2068 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SMARCA1P28370 ARSEP1-202ENST00000430152 499 ntTSL 3 BASIC15.73■□□□□ 0.11
SMARCA1P28370 AC004895.1-202ENST00000435547 547 ntTSL 5 BASIC15.73■□□□□ 0.11
SMARCA1P28370 AC253536.4-201ENST00000440539 267 ntBASIC15.73■□□□□ 0.11
SMARCA1P28370 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC15.73■□□□□ 0.11
SMARCA1P28370 NALT1-202ENST00000450304 437 ntTSL 3 BASIC15.73■□□□□ 0.11
SMARCA1P28370 AC104212.2-201ENST00000478813 628 ntBASIC15.73■□□□□ 0.11
SMARCA1P28370 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC15.73■□□□□ 0.11
SMARCA1P28370 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC15.73■□□□□ 0.11
SMARCA1P28370 TRMT112P3-201ENST00000580149 358 ntBASIC15.73■□□□□ 0.11
SMARCA1P28370 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC15.73■□□□□ 0.11
SMARCA1P28370 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC15.73■□□□□ 0.11
SMARCA1P28370 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SMARCA1P28370 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SMARCA1P28370 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SMARCA1P28370 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SMARCA1P28370 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SMARCA1P28370 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SMARCA1P28370 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SMARCA1P28370 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC15.73■□□□□ 0.11
SMARCA1P28370 RTN3-210ENST00000540798 3124 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SMARCA1P28370 C17orf80-202ENST00000268942 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
SMARCA1P28370 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC15.73■□□□□ 0.11
SMARCA1P28370 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SMARCA1P28370 ARMC7-201ENST00000245543 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SMARCA1P28370 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SMARCA1P28370 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
SMARCA1P28370 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SMARCA1P28370 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SMARCA1P28370 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SMARCA1P28370 TMPRSS4-213ENST00000522824 2052 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SMARCA1P28370 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SMARCA1P28370 DRD2-204ENST00000538967 1493 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
SMARCA1P28370 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC15.72■□□□□ 0.11
SMARCA1P28370 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SMARCA1P28370 POM121L4P-202ENST00000427789 1891 ntBASIC15.72■□□□□ 0.11
SMARCA1P28370 ZNF683-205ENST00000436292 1712 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
SMARCA1P28370 SLC2A14-205ENST00000535295 1732 ntTSL 2 BASIC15.72■□□□□ 0.11
SMARCA1P28370 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SMARCA1P28370 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SMARCA1P28370 MEIS2-215ENST00000559561 1442 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
SMARCA1P28370 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SMARCA1P28370 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
SMARCA1P28370 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SMARCA1P28370 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SMARCA1P28370 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
SMARCA1P28370 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SMARCA1P28370 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SMARCA1P28370 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC15.72■□□□□ 0.11
SMARCA1P28370 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SMARCA1P28370 CTBP2P4-201ENST00000513884 920 ntBASIC15.72■□□□□ 0.11
SMARCA1P28370 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SMARCA1P28370 LINC00677-201ENST00000558224 486 ntTSL 3 BASIC15.72■□□□□ 0.11
SMARCA1P28370 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SMARCA1P28370 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SMARCA1P28370 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC15.72■□□□□ 0.11
SMARCA1P28370 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC15.72■□□□□ 0.11
SMARCA1P28370 AC007998.2-201ENST00000589258 455 ntAPPRIS P1 TSL 3 BASIC15.72■□□□□ 0.11
SMARCA1P28370 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SMARCA1P28370 AC073869.4-201ENST00000620841 800 ntBASIC15.72■□□□□ 0.11
SMARCA1P28370 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC15.72■□□□□ 0.11
SMARCA1P28370 SNX1-214ENST00000625244 324 ntTSL 5 BASIC15.72■□□□□ 0.11
SMARCA1P28370 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SMARCA1P28370 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
SMARCA1P28370 AC105206.1-202ENST00000314927 2368 ntBASIC15.72■□□□□ 0.11
SMARCA1P28370 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC15.72■□□□□ 0.11
SMARCA1P28370 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SMARCA1P28370 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SMARCA1P28370 FCHSD1-209ENST00000522783 2477 ntTSL 5 BASIC15.72■□□□□ 0.11
SMARCA1P28370 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
SMARCA1P28370 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SMARCA1P28370 ZFYVE19-202ENST00000336455 1784 ntTSL 2 BASIC15.72■□□□□ 0.11
SMARCA1P28370 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC15.72■□□□□ 0.11
SMARCA1P28370 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
SMARCA1P28370 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SMARCA1P28370 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
SMARCA1P28370 SEC13-203ENST00000383801 1479 ntTSL 2 BASIC15.71■□□□□ 0.11
SMARCA1P28370 CA6-205ENST00000480186 1493 ntTSL 2 BASIC15.71■□□□□ 0.11
SMARCA1P28370 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC15.71■□□□□ 0.11
SMARCA1P28370 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SMARCA1P28370 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SMARCA1P28370 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SMARCA1P28370 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SMARCA1P28370 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
SMARCA1P28370 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SMARCA1P28370 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC15.71■□□□□ 0.11
SMARCA1P28370 SBF1P1-201ENST00000444527 5631 ntBASIC15.71■□□□□ 0.11
SMARCA1P28370 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SMARCA1P28370 RCAN2-204ENST00000405162 2457 ntTSL 5 BASIC15.71■□□□□ 0.11
SMARCA1P28370 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SMARCA1P28370 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
SMARCA1P28370 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SMARCA1P28370 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC15.71■□□□□ 0.11
SMARCA1P28370 SGK2-203ENST00000373092 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms