Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RXRBP28702 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RXRBP28702 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
RXRBP28702 CREB5-205ENST00000409603 1944 ntTSL 2 BASIC17.5■□□□□ 0.39
RXRBP28702 FAM153C-201ENST00000398106 1510 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
RXRBP28702 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC17.5■□□□□ 0.39
RXRBP28702 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
RXRBP28702 ZSCAN29-207ENST00000568898 1389 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RXRBP28702 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RXRBP28702 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RXRBP28702 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
RXRBP28702 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RXRBP28702 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC17.49■□□□□ 0.39
RXRBP28702 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RXRBP28702 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.49■□□□□ 0.39
RXRBP28702 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.49■□□□□ 0.39
RXRBP28702 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RXRBP28702 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
RXRBP28702 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC17.49■□□□□ 0.39
RXRBP28702 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RXRBP28702 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC17.49■□□□□ 0.39
RXRBP28702 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
RXRBP28702 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
RXRBP28702 TIMP1-201ENST00000218388 892 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RXRBP28702 PAGE4-202ENST00000376141 487 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
RXRBP28702 TIMP1-202ENST00000377017 626 ntTSL 2 BASIC17.49■□□□□ 0.39
RXRBP28702 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
RXRBP28702 CR769775.1-203ENST00000399894 579 ntTSL 3 BASIC17.49■□□□□ 0.39
RXRBP28702 CCDC103-203ENST00000410027 571 ntTSL 4 BASIC17.49■□□□□ 0.39
RXRBP28702 RPL10P12-201ENST00000427342 318 ntBASIC17.49■□□□□ 0.39
RXRBP28702 AC046143.1-201ENST00000447139 972 ntTSL 2 BASIC17.49■□□□□ 0.39
RXRBP28702 MYADML-202ENST00000490394 797 ntTSL 3 BASIC17.49■□□□□ 0.39
RXRBP28702 ODF3-203ENST00000525282 764 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RXRBP28702 AC092745.1-201ENST00000535746 603 ntTSL 5 BASIC17.49■□□□□ 0.39
RXRBP28702 ERH-202ENST00000555373 586 ntTSL 2 BASIC17.49■□□□□ 0.39
RXRBP28702 ZBTB25-203ENST00000555424 565 ntTSL 5 BASIC17.49■□□□□ 0.39
RXRBP28702 MPI-212ENST00000565576 1148 ntTSL 2 BASIC17.49■□□□□ 0.39
RXRBP28702 MIR4527HG-201ENST00000586905 675 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RXRBP28702 AC097634.2-201ENST00000615819 604 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RXRBP28702 ADGRG5-207ENST00000615867 762 ntTSL 4 BASIC17.49■□□□□ 0.39
RXRBP28702 GRIA3-208ENST00000620581 2991 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RXRBP28702 AL137785.1-201ENST00000637466 490 ntTSL 5 BASIC17.49■□□□□ 0.39
RXRBP28702 SERPINI1-202ENST00000446050 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RXRBP28702 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RXRBP28702 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RXRBP28702 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RXRBP28702 LILRA5-201ENST00000432233 1363 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
RXRBP28702 KRT26-201ENST00000335552 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RXRBP28702 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.49■□□□□ 0.39
RXRBP28702 AC090505.1-201ENST00000430515 1834 ntBASIC17.49■□□□□ 0.39
RXRBP28702 ZEB1-AS1-208ENST00000607166 2503 ntBASIC17.49■□□□□ 0.39
RXRBP28702 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RXRBP28702 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC17.49■□□□□ 0.39
RXRBP28702 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RXRBP28702 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RXRBP28702 KIR2DP1-201ENST00000415311 1331 ntBASIC17.48■□□□□ 0.39
RXRBP28702 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RXRBP28702 SLC26A5-211ENST00000432958 2588 ntTSL 5 BASIC17.48■□□□□ 0.39
RXRBP28702 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
RXRBP28702 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RXRBP28702 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RXRBP28702 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RXRBP28702 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
RXRBP28702 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.48■□□□□ 0.39
RXRBP28702 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RXRBP28702 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
RXRBP28702 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
RXRBP28702 FOLR1-201ENST00000312293 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RXRBP28702 AP000487.2-201ENST00000324630 394 ntTSL 3 BASIC17.48■□□□□ 0.39
RXRBP28702 KRTAP13-1-201ENST00000355459 749 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
RXRBP28702 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC17.48■□□□□ 0.39
RXRBP28702 AC022733.2-201ENST00000520487 531 ntTSL 2 BASIC17.48■□□□□ 0.39
RXRBP28702 AL354993.2-201ENST00000558738 542 ntTSL 4 BASIC17.48■□□□□ 0.39
RXRBP28702 AC005086.1-201ENST00000566572 801 ntTSL 5 BASIC17.48■□□□□ 0.39
RXRBP28702 AC015563.2-201ENST00000579580 772 ntTSL 3 BASIC17.48■□□□□ 0.39
RXRBP28702 AP005203.1-202ENST00000584204 561 ntTSL 4 BASIC17.48■□□□□ 0.39
RXRBP28702 AC004832.1-204ENST00000610737 1018 ntTSL 5 BASIC17.48■□□□□ 0.39
RXRBP28702 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RXRBP28702 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RXRBP28702 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC17.48■□□□□ 0.39
RXRBP28702 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC17.48■□□□□ 0.39
RXRBP28702 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.48■□□□□ 0.39
RXRBP28702 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RXRBP28702 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RXRBP28702 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC17.48■□□□□ 0.39
RXRBP28702 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC17.48■□□□□ 0.39
RXRBP28702 LINC01837-201ENST00000590021 1320 ntTSL 5 BASIC17.47■□□□□ 0.39
RXRBP28702 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RXRBP28702 ALLC-201ENST00000252505 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RXRBP28702 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
RXRBP28702 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RXRBP28702 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RXRBP28702 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RXRBP28702 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
RXRBP28702 SERPINA13P-201ENST00000469935 1718 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RXRBP28702 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC17.47■□□□□ 0.39
RXRBP28702 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC17.47■□□□□ 0.39
RXRBP28702 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC17.47■□□□□ 0.39
RXRBP28702 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RXRBP28702 TIPRL-201ENST00000367830 727 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms