Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL5A1P20908 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
COL5A1P20908 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC12.86□□□□□ -0.35
COL5A1P20908 ALG6-202ENST00000371108 3371 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL5A1P20908 AP002414.2-201ENST00000591780 3365 ntBASIC12.86□□□□□ -0.35
COL5A1P20908 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL5A1P20908 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL5A1P20908 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
COL5A1P20908 DRD2-204ENST00000538967 1493 ntAPPRIS ALT1 TSL 5 BASIC12.86□□□□□ -0.35
COL5A1P20908 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL5A1P20908 FAM238C-202ENST00000639963 1787 ntTSL 2 BASIC12.86□□□□□ -0.35
COL5A1P20908 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL5A1P20908 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC12.86□□□□□ -0.35
COL5A1P20908 FAM86C1-202ENST00000359244 2110 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
COL5A1P20908 MBOAT4-201ENST00000320542 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL5A1P20908 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL5A1P20908 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
COL5A1P20908 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC12.86□□□□□ -0.35
COL5A1P20908 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC12.86□□□□□ -0.35
COL5A1P20908 EPB42-210ENST00000622454 2227 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 TIMP1-201ENST00000218388 892 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 LINC00449-201ENST00000366259 872 ntTSL 2 BASIC12.85□□□□□ -0.35
COL5A1P20908 TIMP1-202ENST00000377017 626 ntTSL 2 BASIC12.85□□□□□ -0.35
COL5A1P20908 FAM9C-202ENST00000380625 1122 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 OR2T32P-201ENST00000403423 963 ntBASIC12.85□□□□□ -0.35
COL5A1P20908 LIMS2-203ENST00000409254 867 ntTSL 3 BASIC12.85□□□□□ -0.35
COL5A1P20908 TISP43-202ENST00000409982 1039 ntAPPRIS P5 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 LINC02036-201ENST00000415869 910 ntTSL 3 BASIC12.85□□□□□ -0.35
COL5A1P20908 BX088651.3-201ENST00000418155 352 ntBASIC12.85□□□□□ -0.35
COL5A1P20908 AC090696.1-201ENST00000419100 418 ntTSL 3 BASIC12.85□□□□□ -0.35
COL5A1P20908 AL359979.2-201ENST00000435108 613 ntTSL 3 BASIC12.85□□□□□ -0.35
COL5A1P20908 AL022725.1-201ENST00000436283 369 ntTSL 2 BASIC12.85□□□□□ -0.35
COL5A1P20908 COL18A1-AS2-201ENST00000446475 552 ntTSL 4 BASIC12.85□□□□□ -0.35
COL5A1P20908 TMCO1-203ENST00000464650 1100 ntTSL 2 BASIC12.85□□□□□ -0.35
COL5A1P20908 AC008021.1-201ENST00000474180 414 ntBASIC12.85□□□□□ -0.35
COL5A1P20908 MYCBP-203ENST00000494695 750 ntTSL 2 BASIC12.85□□□□□ -0.35
COL5A1P20908 IMMP1L-215ENST00000534812 612 ntTSL 2 BASIC12.85□□□□□ -0.35
COL5A1P20908 AC078923.1-201ENST00000552856 748 ntTSL 3 BASIC12.85□□□□□ -0.35
COL5A1P20908 AC120498.5-201ENST00000561757 299 ntBASIC12.85□□□□□ -0.35
COL5A1P20908 TEX38-204ENST00000564373 637 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 AC127496.3-201ENST00000576032 494 ntTSL 3 BASIC12.85□□□□□ -0.35
COL5A1P20908 MIR4539-201ENST00000579784 60 ntBASIC12.85□□□□□ -0.35
COL5A1P20908 AC112220.4-201ENST00000604982 1263 ntBASIC12.85□□□□□ -0.35
COL5A1P20908 LINC00694-204ENST00000637612 1059 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
COL5A1P20908 TBC1D8B-202ENST00000310452 2589 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 OXGR1-204ENST00000543457 1305 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 LINC00910-201ENST00000341011 2303 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 ALDOA-213ENST00000564595 1663 ntTSL 2 BASIC12.85□□□□□ -0.35
COL5A1P20908 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC12.85□□□□□ -0.35
COL5A1P20908 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 UCKL1-AS1-201ENST00000623569 3602 ntBASIC12.85□□□□□ -0.35
COL5A1P20908 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
COL5A1P20908 TMUB2-205ENST00000587172 1598 ntTSL 2 BASIC12.85□□□□□ -0.35
COL5A1P20908 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 AC020917.4-201ENST00000623994 1999 ntBASIC12.85□□□□□ -0.35
COL5A1P20908 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
COL5A1P20908 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 CCL24-201ENST00000222902 582 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 TEPP-201ENST00000290871 1079 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 RN7SL33P-201ENST00000462543 342 ntBASIC12.85□□□□□ -0.35
COL5A1P20908 AL358215.1-201ENST00000481350 482 ntTSL 5 BASIC12.85□□□□□ -0.35
COL5A1P20908 EFNA5-204ENST00000509503 637 ntTSL 5 BASIC12.85□□□□□ -0.35
COL5A1P20908 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC12.85□□□□□ -0.35
COL5A1P20908 IDH3A-213ENST00000559205 566 ntTSL 4 BASIC12.85□□□□□ -0.35
COL5A1P20908 DSCAS-201ENST00000581836 553 ntTSL 4 BASIC12.85□□□□□ -0.35
COL5A1P20908 BOLA3P2-201ENST00000586496 323 ntBASIC12.85□□□□□ -0.35
COL5A1P20908 MFSD12-215ENST00000615613 688 ntBASIC12.85□□□□□ -0.35
COL5A1P20908 AC012594.1-273ENST00000626618 816 ntTSL 5 BASIC12.85□□□□□ -0.35
COL5A1P20908 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 SERPINA13P-201ENST00000469935 1718 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 LINC02486-201ENST00000604157 3000 ntBASIC12.85□□□□□ -0.35
COL5A1P20908 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 SLC7A9-201ENST00000023064 1761 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 ADCK1-201ENST00000238561 2234 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC12.85□□□□□ -0.35
COL5A1P20908 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 WASHC1-201ENST00000442898 1827 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
COL5A1P20908 AC073548.1-201ENST00000624088 1882 ntBASIC12.85□□□□□ -0.35
COL5A1P20908 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC12.85□□□□□ -0.35
COL5A1P20908 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC12.85□□□□□ -0.35
COL5A1P20908 ANKDD1A-207ENST00000496660 1477 ntTSL 2 BASIC12.85□□□□□ -0.35
COL5A1P20908 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL5A1P20908 AC005840.4-201ENST00000541242 2494 ntBASIC12.84□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms