Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
COL9A1P20849 AC159540.1-201ENST00000422600 555 ntTSL 4 BASIC14.18□□□□□ -0.14
COL9A1P20849 KCNK15-AS1-203ENST00000427598 862 ntTSL 2 BASIC14.18□□□□□ -0.14
COL9A1P20849 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC14.18□□□□□ -0.14
COL9A1P20849 PRSS3P1-201ENST00000503996 742 ntBASIC14.18□□□□□ -0.14
COL9A1P20849 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL9A1P20849 AC137794.1-201ENST00000509185 914 ntTSL 5 BASIC14.18□□□□□ -0.14
COL9A1P20849 RBM7-208ENST00000545678 867 ntTSL 3 BASIC14.18□□□□□ -0.14
COL9A1P20849 AC090616.6-202ENST00000583601 1088 ntBASIC14.18□□□□□ -0.14
COL9A1P20849 AC090330.1-201ENST00000588646 764 ntBASIC14.18□□□□□ -0.14
COL9A1P20849 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
COL9A1P20849 AL158032.2-201ENST00000616818 195 ntBASIC14.18□□□□□ -0.14
COL9A1P20849 AC139100.2-201ENST00000616901 662 ntBASIC14.18□□□□□ -0.14
COL9A1P20849 AC126755.5-201ENST00000622756 267 ntBASIC14.18□□□□□ -0.14
COL9A1P20849 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL9A1P20849 INTS4P1-203ENST00000641008 3683 ntBASIC14.18□□□□□ -0.14
COL9A1P20849 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC14.18□□□□□ -0.14
COL9A1P20849 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL9A1P20849 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL9A1P20849 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL9A1P20849 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC14.18□□□□□ -0.14
COL9A1P20849 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC14.18□□□□□ -0.14
COL9A1P20849 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.18□□□□□ -0.14
COL9A1P20849 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL9A1P20849 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL9A1P20849 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
COL9A1P20849 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
COL9A1P20849 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC14.18□□□□□ -0.14
COL9A1P20849 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
COL9A1P20849 AL031590.1-202ENST00000641466 1737 ntBASIC14.18□□□□□ -0.14
COL9A1P20849 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL9A1P20849 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL9A1P20849 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL9A1P20849 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL9A1P20849 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL9A1P20849 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
COL9A1P20849 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL9A1P20849 CCNT2P1-201ENST00000423082 1315 ntBASIC14.17□□□□□ -0.14
COL9A1P20849 AC026271.1-201ENST00000447794 1348 ntBASIC14.17□□□□□ -0.14
COL9A1P20849 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL9A1P20849 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC14.17□□□□□ -0.14
COL9A1P20849 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC14.17□□□□□ -0.14
COL9A1P20849 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL9A1P20849 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL9A1P20849 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL9A1P20849 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC14.17□□□□□ -0.14
COL9A1P20849 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.17□□□□□ -0.14
COL9A1P20849 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL9A1P20849 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL9A1P20849 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL9A1P20849 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL9A1P20849 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
COL9A1P20849 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL9A1P20849 OR51B5-201ENST00000300773 939 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
COL9A1P20849 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL9A1P20849 TAC4-203ENST00000352793 564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL9A1P20849 KRTAP1-5-201ENST00000361883 1177 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
COL9A1P20849 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
COL9A1P20849 NPM1P10-201ENST00000398310 865 ntBASIC14.17□□□□□ -0.14
COL9A1P20849 AC007966.1-201ENST00000421998 1179 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL9A1P20849 ATP6AP2-202ENST00000423649 1093 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
COL9A1P20849 ACTG1P23-201ENST00000437653 1074 ntBASIC14.17□□□□□ -0.14
COL9A1P20849 PLAC9P1-203ENST00000440031 223 ntBASIC14.17□□□□□ -0.14
COL9A1P20849 AL513283.1-201ENST00000441790 1087 ntTSL 5 BASIC14.17□□□□□ -0.14
COL9A1P20849 AL137077.1-201ENST00000442115 528 ntBASIC14.17□□□□□ -0.14
COL9A1P20849 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC14.17□□□□□ -0.14
COL9A1P20849 AC008021.1-201ENST00000474180 414 ntBASIC14.17□□□□□ -0.14
COL9A1P20849 AC009646.2-202ENST00000524425 826 ntTSL 3 BASIC14.17□□□□□ -0.14
COL9A1P20849 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL9A1P20849 MT1X-202ENST00000562939 538 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL9A1P20849 AC026461.1-201ENST00000567563 551 ntTSL 4 BASIC14.17□□□□□ -0.14
COL9A1P20849 AC012181.2-201ENST00000570210 699 ntBASIC14.17□□□□□ -0.14
COL9A1P20849 Z69706.1-201ENST00000595428 547 ntBASIC14.17□□□□□ -0.14
COL9A1P20849 TUBB4A-207ENST00000596926 548 ntTSL 4 BASIC14.17□□□□□ -0.14
COL9A1P20849 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC14.17□□□□□ -0.14
COL9A1P20849 SNX20-205ENST00000610485 557 ntTSL 5 BASIC14.17□□□□□ -0.14
COL9A1P20849 AL031673.1-201ENST00000611460 466 ntBASIC14.17□□□□□ -0.14
COL9A1P20849 AC026336.4-201ENST00000624565 1050 ntBASIC14.17□□□□□ -0.14
COL9A1P20849 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC14.17□□□□□ -0.14
COL9A1P20849 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL9A1P20849 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL9A1P20849 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC14.17□□□□□ -0.14
COL9A1P20849 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC14.17□□□□□ -0.14
COL9A1P20849 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
COL9A1P20849 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC14.17□□□□□ -0.14
COL9A1P20849 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC14.17□□□□□ -0.14
COL9A1P20849 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
COL9A1P20849 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL9A1P20849 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL9A1P20849 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL9A1P20849 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL9A1P20849 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL9A1P20849 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
COL9A1P20849 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL9A1P20849 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
COL9A1P20849 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC14.17□□□□□ -0.14
COL9A1P20849 AC012617.1-204ENST00000586340 2305 ntBASIC14.16□□□□□ -0.14
COL9A1P20849 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.16□□□□□ -0.14
COL9A1P20849 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL9A1P20849 ADK-205ENST00000539909 1866 ntTSL 2 BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms