Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
ERCC3P19447 DUT-208ENST00000559540 1441 ntTSL 2 BASIC16.08■□□□□ 0.16
ERCC3P19447 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
ERCC3P19447 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
ERCC3P19447 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC16.08■□□□□ 0.16
ERCC3P19447 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
ERCC3P19447 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
ERCC3P19447 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
ERCC3P19447 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
ERCC3P19447 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
ERCC3P19447 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
ERCC3P19447 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC16.08■□□□□ 0.16
ERCC3P19447 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC16.08■□□□□ 0.16
ERCC3P19447 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
ERCC3P19447 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
ERCC3P19447 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC16.08■□□□□ 0.16
ERCC3P19447 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC16.08■□□□□ 0.16
ERCC3P19447 GOLGA8UP-201ENST00000527159 1755 ntBASIC16.08■□□□□ 0.16
ERCC3P19447 AL365181.1-201ENST00000564032 1828 ntBASIC16.08■□□□□ 0.16
ERCC3P19447 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
ERCC3P19447 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
ERCC3P19447 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
ERCC3P19447 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.16
ERCC3P19447 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
ERCC3P19447 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
ERCC3P19447 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
ERCC3P19447 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC16.07■□□□□ 0.16
ERCC3P19447 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC3P19447 AC089987.1-201ENST00000551654 2209 ntBASIC16.07■□□□□ 0.16
ERCC3P19447 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC3P19447 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC3P19447 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC3P19447 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC3P19447 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC3P19447 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC16.07■□□□□ 0.16
ERCC3P19447 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
ERCC3P19447 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC3P19447 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC3P19447 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC3P19447 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC16.07■□□□□ 0.16
ERCC3P19447 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC3P19447 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC16.07■□□□□ 0.16
ERCC3P19447 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC3P19447 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC3P19447 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC16.07■□□□□ 0.16
ERCC3P19447 KRT18P62-201ENST00000446618 1287 ntBASIC16.07■□□□□ 0.16
ERCC3P19447 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC16.07■□□□□ 0.16
ERCC3P19447 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC16.07■□□□□ 0.16
ERCC3P19447 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC16.07■□□□□ 0.16
ERCC3P19447 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC16.07■□□□□ 0.16
ERCC3P19447 AL031673.1-201ENST00000611460 466 ntBASIC16.07■□□□□ 0.16
ERCC3P19447 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC3P19447 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC3P19447 AC004554.1-201ENST00000422830 1468 ntBASIC16.07■□□□□ 0.16
ERCC3P19447 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC16.07■□□□□ 0.16
ERCC3P19447 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
ERCC3P19447 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC16.07■□□□□ 0.16
ERCC3P19447 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC3P19447 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC16.07■□□□□ 0.16
ERCC3P19447 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC3P19447 AC005014.1-201ENST00000432006 2976 ntBASIC16.07■□□□□ 0.16
ERCC3P19447 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC3P19447 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC3P19447 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC3P19447 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC3P19447 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
ERCC3P19447 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ERCC3P19447 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ERCC3P19447 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC16.06■□□□□ 0.16
ERCC3P19447 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
ERCC3P19447 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
ERCC3P19447 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC16.06■□□□□ 0.16
ERCC3P19447 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
ERCC3P19447 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC16.06■□□□□ 0.16
ERCC3P19447 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC16.06■□□□□ 0.16
ERCC3P19447 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC16.06■□□□□ 0.16
ERCC3P19447 MEX3B-202ENST00000558133 4333 ntBASIC16.06■□□□□ 0.16
ERCC3P19447 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
ERCC3P19447 AL590824.1-201ENST00000403828 1349 ntBASIC16.06■□□□□ 0.16
ERCC3P19447 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ERCC3P19447 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC16.06■□□□□ 0.16
ERCC3P19447 MIR566-201ENST00000385187 94 ntBASIC16.06■□□□□ 0.16
ERCC3P19447 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC16.06■□□□□ 0.16
ERCC3P19447 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC16.06■□□□□ 0.16
ERCC3P19447 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC16.06■□□□□ 0.16
ERCC3P19447 BPIFB5P-201ENST00000457066 1099 ntBASIC16.06■□□□□ 0.16
ERCC3P19447 AC063952.3-201ENST00000467756 308 ntBASIC16.06■□□□□ 0.16
ERCC3P19447 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC16.06■□□□□ 0.16
ERCC3P19447 AC093300.1-201ENST00000510368 1201 ntBASIC16.06■□□□□ 0.16
ERCC3P19447 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ERCC3P19447 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC16.06■□□□□ 0.16
ERCC3P19447 AP005212.2-201ENST00000584979 510 ntBASIC16.06■□□□□ 0.16
ERCC3P19447 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
ERCC3P19447 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC16.06■□□□□ 0.16
ERCC3P19447 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
ERCC3P19447 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ERCC3P19447 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC16.06■□□□□ 0.16
ERCC3P19447 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ERCC3P19447 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC16.06■□□□□ 0.16
ERCC3P19447 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms