Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC10.78□□□□□ -0.68
CXCL1P09341 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC10.78□□□□□ -0.68
CXCL1P09341 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC10.78□□□□□ -0.68
CXCL1P09341 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC10.78□□□□□ -0.68
CXCL1P09341 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC10.78□□□□□ -0.68
CXCL1P09341 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC10.78□□□□□ -0.68
CXCL1P09341 IFT20-206ENST00000578122 834 ntTSL 2 BASIC10.78□□□□□ -0.68
CXCL1P09341 IFT20-208ENST00000578985 831 ntTSL 3 BASIC10.78□□□□□ -0.68
CXCL1P09341 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC10.78□□□□□ -0.68
CXCL1P09341 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC10.78□□□□□ -0.68
CXCL1P09341 AC138696.2-201ENST00000607376 223 ntBASIC10.78□□□□□ -0.68
CXCL1P09341 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC10.78□□□□□ -0.68
CXCL1P09341 AP005019.2-201ENST00000615104 511 ntBASIC10.78□□□□□ -0.68
CXCL1P09341 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
CXCL1P09341 CACNA1G-229ENST00000514181 6795 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
CXCL1P09341 DGKZ-220ENST00000532868 3118 ntTSL 2 BASIC10.78□□□□□ -0.68
CXCL1P09341 ADAM12-202ENST00000368679 7938 ntAPPRIS P4 TSL 1 (best) BASIC10.78□□□□□ -0.68
CXCL1P09341 F10-203ENST00000409306 1450 ntTSL 3 BASIC10.78□□□□□ -0.68
CXCL1P09341 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CXCL1P09341 FBXO32-203ENST00000517956 6744 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CXCL1P09341 VDR-208ENST00000550325 3925 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
CXCL1P09341 ARL4C-201ENST00000339728 3385 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
CXCL1P09341 ADCY7-202ENST00000394697 6213 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
CXCL1P09341 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
CXCL1P09341 YY1AP1-205ENST00000355499 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
CXCL1P09341 TJP2-209ENST00000539225 3838 ntAPPRIS ALT2 TSL 2 BASIC10.78□□□□□ -0.68
CXCL1P09341 SHMT2-201ENST00000328923 2537 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
CXCL1P09341 AKNA-203ENST00000312033 3334 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
CXCL1P09341 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.68
CXCL1P09341 GZF1-202ENST00000377051 4740 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
CXCL1P09341 PLEKHA7-202ENST00000355661 4980 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.68
CXCL1P09341 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
CXCL1P09341 CAPRIN1-212ENST00000532820 3438 ntAPPRIS P4 TSL 1 (best) BASIC10.77□□□□□ -0.68
CXCL1P09341 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
CXCL1P09341 HOPX-202ENST00000337881 1611 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
CXCL1P09341 LINC01624-203ENST00000607074 3265 ntTSL 2 BASIC10.77□□□□□ -0.68
CXCL1P09341 NTNG1-207ENST00000370073 3347 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.69
CXCL1P09341 AL031714.1-201ENST00000567829 2926 ntTSL 5 BASIC10.77□□□□□ -0.69
CXCL1P09341 CLINT1-206ENST00000523094 3987 ntTSL 2 BASIC10.77□□□□□ -0.69
CXCL1P09341 AP000347.1-201ENST00000417194 5004 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
CXCL1P09341 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
CXCL1P09341 PARD6B-201ENST00000371610 4615 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
CXCL1P09341 FOXD2-AS1-201ENST00000445551 2509 ntBASIC10.77□□□□□ -0.69
CXCL1P09341 CACNA2D2-202ENST00000360963 5272 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
CXCL1P09341 AC091178.1-201ENST00000583447 2305 ntTSL 2 BASIC10.77□□□□□ -0.69
CXCL1P09341 ZNF667-201ENST00000292069 3832 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
CXCL1P09341 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
CXCL1P09341 RN7SKP230-201ENST00000365642 335 ntBASIC10.77□□□□□ -0.69
CXCL1P09341 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
CXCL1P09341 C1QBPP1-201ENST00000400117 770 ntBASIC10.77□□□□□ -0.69
CXCL1P09341 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
CXCL1P09341 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.69
CXCL1P09341 ARSEP1-201ENST00000420443 635 ntBASIC10.77□□□□□ -0.69
CXCL1P09341 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
CXCL1P09341 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC10.77□□□□□ -0.69
CXCL1P09341 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
CXCL1P09341 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC10.77□□□□□ -0.69
CXCL1P09341 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC10.77□□□□□ -0.69
CXCL1P09341 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC10.77□□□□□ -0.69
CXCL1P09341 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC10.77□□□□□ -0.69
CXCL1P09341 AC109322.1-201ENST00000524499 1264 ntBASIC10.77□□□□□ -0.69
CXCL1P09341 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC10.77□□□□□ -0.69
CXCL1P09341 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC10.77□□□□□ -0.69
CXCL1P09341 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.69
CXCL1P09341 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC10.77□□□□□ -0.69
CXCL1P09341 AL390955.2-201ENST00000603032 514 ntBASIC10.77□□□□□ -0.69
CXCL1P09341 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.69
CXCL1P09341 DBH-202ENST00000393056 2763 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
CXCL1P09341 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC10.77□□□□□ -0.69
CXCL1P09341 GPALPP1-202ENST00000361121 3410 ntAPPRIS ALT1 TSL 5 BASIC10.77□□□□□ -0.69
CXCL1P09341 FLNA-203ENST00000369850 8382 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
CXCL1P09341 PPP4R1-202ENST00000400555 3885 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
CXCL1P09341 ZIK1-202ENST00000536878 4144 ntAPPRIS ALT2 TSL 2 BASIC10.77□□□□□ -0.69
CXCL1P09341 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
CXCL1P09341 AMT-232ENST00000636199 1546 ntTSL 5 BASIC10.77□□□□□ -0.69
CXCL1P09341 DDAH1-201ENST00000284031 3920 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
CXCL1P09341 SLC16A7-203ENST00000547379 1969 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
CXCL1P09341 ENOSF1-203ENST00000383578 4188 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
CXCL1P09341 CPNE4-201ENST00000429747 4184 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
CXCL1P09341 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
CXCL1P09341 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC10.77□□□□□ -0.69
CXCL1P09341 AP002986.1-201ENST00000602376 1763 ntTSL 5 BASIC10.77□□□□□ -0.69
CXCL1P09341 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.69
CXCL1P09341 DLGAP1-201ENST00000315677 6683 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.69
CXCL1P09341 CAPN13-201ENST00000295055 2683 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.69
CXCL1P09341 UQCRB-201ENST00000287022 5575 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
CXCL1P09341 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
CXCL1P09341 PCCB-210ENST00000471595 6090 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
CXCL1P09341 MANEA-AS1-201ENST00000564541 2268 ntBASIC10.77□□□□□ -0.69
CXCL1P09341 APAF1-202ENST00000357310 7055 ntAPPRIS ALT1 TSL 5 BASIC10.77□□□□□ -0.69
CXCL1P09341 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC10.77□□□□□ -0.69
CXCL1P09341 PIGG-203ENST00000453061 3218 ntAPPRIS ALT1 TSL 1 (best) BASIC10.77□□□□□ -0.69
CXCL1P09341 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC10.76□□□□□ -0.69
CXCL1P09341 TESPA1-201ENST00000316577 1898 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC10.76□□□□□ -0.69
CXCL1P09341 MYL9-201ENST00000279022 2821 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
CXCL1P09341 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
CXCL1P09341 CACNA1G-209ENST00000502264 6921 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms