Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 NDUFAF6-202ENST00000396113 2549 ntTSL 5 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 VPS33B-201ENST00000333371 2767 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 TMEM178B-202ENST00000565468 10558 ntAPPRIS P2 TSL 5 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 TMEM178B-203ENST00000610315 10552 ntAPPRIS ALT1 TSL 5 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 BHLHB9-203ENST00000447531 4031 ntAPPRIS P1 TSL 4 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 PPT1-219ENST00000642050 4010 ntAPPRIS P2 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 DEK-201ENST00000244776 1441 ntTSL 2 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 AS3MT-201ENST00000369880 2404 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 CDX2-201ENST00000381020 4053 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 GRB10-202ENST00000357271 2050 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 RNF34-203ENST00000392465 2051 ntAPPRIS P3 TSL 5 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 SNRNP27-201ENST00000244227 1802 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 RBM25-204ENST00000526754 1567 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 VGLL4-201ENST00000273038 3725 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 CCDC120-207ENST00000606812 3857 ntAPPRIS P3 TSL 1 (best) BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 LILRB3-202ENST00000346401 2204 ntAPPRIS ALT2 TSL 5 BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 TLR5-201ENST00000366881 3368 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.05
LINC00643Q86TS7 INMT-MINDY4-202ENST00000458257 2877 ntAPPRIS P5 TSL 2 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 PTPRR-201ENST00000283228 3529 ntAPPRIS P3 TSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 AC025279.1-201ENST00000604430 4818 ntTSL 5 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 AC093642.2-201ENST00000625132 4805 ntBASIC8.51□□□□□ -1.05
LINC00643Q86TS7 TRMT1-202ENST00000357720 2142 ntAPPRIS P3 TSL 2 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 UBASH3B-201ENST00000284273 6912 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 DESI1-201ENST00000263256 3833 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 TRAF3IP2-202ENST00000359831 2264 ntAPPRIS ALT1 TSL 2 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 GTF2I-218ENST00000620879 4352 ntAPPRIS ALT1 TSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 RNF4-201ENST00000314289 3088 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 TYK2-202ENST00000524462 3456 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 GTPBP2-201ENST00000307114 2830 ntTSL 2 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 TMEM174-201ENST00000296776 1759 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 GDA-203ENST00000376986 1771 ntTSL 2 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 Z98885.3-201ENST00000624882 1757 ntBASIC8.51□□□□□ -1.05
LINC00643Q86TS7 ANKMY1-201ENST00000272972 3228 ntAPPRIS P3 TSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 ZUFSP-202ENST00000368576 2195 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 POLE3-202ENST00000374171 2191 ntAPPRIS P1 TSL 2 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 SPECC1L-204ENST00000437398 6674 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 AFF2-205ENST00000370460 13746 ntAPPRIS P1 TSL 5 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 HOPX-205ENST00000420433 1543 ntTSL 5 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 WDR6-220ENST00000608424 4070 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 IGSF5-201ENST00000380588 2066 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 C1RL-AS1-201ENST00000382215 2086 ntTSL 2 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 PRRC2B-203ENST00000405995 9157 ntTSL 5 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 ARL8B-202ENST00000419534 1684 ntTSL 2 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 RPS15P9-201ENST00000494093 319 ntBASIC8.51□□□□□ -1.05
LINC00643Q86TS7 SRP19-206ENST00000515463 660 ntTSL 3 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 AC131206.1-201ENST00000538078 1211 ntBASIC8.51□□□□□ -1.05
LINC00643Q86TS7 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 AL441883.1-201ENST00000566170 1045 ntBASIC8.51□□□□□ -1.05
LINC00643Q86TS7 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 AC087623.3-201ENST00000607047 1098 ntBASIC8.51□□□□□ -1.05
LINC00643Q86TS7 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 TDRD3-201ENST00000196169 3019 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 EIF4BP7-201ENST00000432307 1813 ntBASIC8.51□□□□□ -1.05
LINC00643Q86TS7 RBM10-203ENST00000377604 3747 ntAPPRIS P3 TSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 CCDC138-201ENST00000295124 2383 ntAPPRIS P3 TSL 2 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 AXIN1-202ENST00000354866 3324 ntAPPRIS ALT2 TSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 AP005117.1-201ENST00000584346 1413 ntBASIC8.51□□□□□ -1.05
LINC00643Q86TS7 VRTN-201ENST00000256362 3466 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 ENPP5-201ENST00000230565 2544 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 NRXN3-217ENST00000634499 6069 ntAPPRIS ALT2 TSL 5 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 PBRM1-201ENST00000296302 5145 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 PCSK9-201ENST00000302118 3637 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 ALAS1-202ENST00000394965 2430 ntAPPRIS P1 TSL 2 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 TAF1C-201ENST00000341690 3678 ntAPPRIS ALT2 TSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 MOV10-203ENST00000369645 3552 ntAPPRIS P1 TSL 5 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 EFHC1-224ENST00000636702 2197 ntTSL 5 BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC8.51□□□□□ -1.05
LINC00643Q86TS7 RYR1-201ENST00000355481 15377 ntAPPRIS ALT2 TSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 LRRC37A7P-201ENST00000583900 2759 ntBASIC8.5□□□□□ -1.05
LINC00643Q86TS7 MIEF1-203ENST00000404569 3797 ntAPPRIS P1 TSL 5 BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 MSANTD4-201ENST00000301919 4087 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 MYT1-202ENST00000360149 2061 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 SLCO2A1-201ENST00000310926 4223 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 SULF2-211ENST00000484875 4238 ntAPPRIS P4 TSL 1 (best) BASIC8.5□□□□□ -1.05
LINC00643Q86TS7 RPL10-218ENST00000618723 2210 ntTSL 5 BASIC8.5□□□□□ -1.05
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms