Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
FOXA1P55317 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
FOXA1P55317 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC13.46□□□□□ -0.25
FOXA1P55317 NKAIN1P1-201ENST00000435754 582 ntBASIC13.46□□□□□ -0.25
FOXA1P55317 DUX4L50-201ENST00000455245 715 ntBASIC13.46□□□□□ -0.25
FOXA1P55317 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC13.46□□□□□ -0.25
FOXA1P55317 FAM8A2P-201ENST00000528813 1142 ntBASIC13.46□□□□□ -0.25
FOXA1P55317 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC13.46□□□□□ -0.25
FOXA1P55317 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC13.46□□□□□ -0.25
FOXA1P55317 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC13.46□□□□□ -0.25
FOXA1P55317 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC13.46□□□□□ -0.25
FOXA1P55317 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC13.46□□□□□ -0.25
FOXA1P55317 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC13.46□□□□□ -0.25
FOXA1P55317 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA1P55317 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC13.46□□□□□ -0.25
FOXA1P55317 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC13.46□□□□□ -0.25
FOXA1P55317 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC13.46□□□□□ -0.25
FOXA1P55317 CYYR1-201ENST00000299340 3101 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA1P55317 ZBTB49-201ENST00000337872 2889 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA1P55317 TMOD1-201ENST00000259365 3343 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
FOXA1P55317 SUPT20HL1-201ENST00000436466 2618 ntBASIC13.46□□□□□ -0.25
FOXA1P55317 RCC2P5-201ENST00000492126 1487 ntBASIC13.46□□□□□ -0.25
FOXA1P55317 CICP9-201ENST00000444451 1913 ntBASIC13.46□□□□□ -0.25
FOXA1P55317 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.26
FOXA1P55317 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC13.46□□□□□ -0.26
FOXA1P55317 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.26
FOXA1P55317 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC13.46□□□□□ -0.26
FOXA1P55317 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
FOXA1P55317 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC13.46□□□□□ -0.26
FOXA1P55317 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
FOXA1P55317 H3F3B-201ENST00000254810 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
FOXA1P55317 FURIN-206ENST00000610579 4191 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
FOXA1P55317 AC022364.1-202ENST00000617468 2409 ntBASIC13.45□□□□□ -0.26
FOXA1P55317 KIR2DL3-201ENST00000342376 1590 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA1P55317 RAB37-204ENST00000392613 2617 ntAPPRIS ALT1 TSL 2 BASIC13.45□□□□□ -0.26
FOXA1P55317 DAO-201ENST00000228476 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA1P55317 RAB3D-201ENST00000222120 4273 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA1P55317 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA1P55317 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC13.45□□□□□ -0.26
FOXA1P55317 EHMT2-203ENST00000375537 3965 ntAPPRIS P4 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA1P55317 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC13.45□□□□□ -0.26
FOXA1P55317 DPAGT1-217ENST00000639704 1719 ntTSL 5 BASIC13.45□□□□□ -0.26
FOXA1P55317 HJURP-207ENST00000441687 2934 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
FOXA1P55317 AOC1-204ENST00000467291 2857 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
FOXA1P55317 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA1P55317 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA1P55317 DANT2-201ENST00000430756 2079 ntTSL 3 BASIC13.45□□□□□ -0.26
FOXA1P55317 CHMP4C-201ENST00000297265 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA1P55317 PCID2-205ENST00000375477 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA1P55317 AC004554.1-201ENST00000422830 1468 ntBASIC13.45□□□□□ -0.26
FOXA1P55317 AF013593.1-201ENST00000458074 1487 ntBASIC13.45□□□□□ -0.26
FOXA1P55317 RPS3-201ENST00000278572 907 ntTSL 3 BASIC13.45□□□□□ -0.26
FOXA1P55317 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC13.45□□□□□ -0.26
FOXA1P55317 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA1P55317 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA1P55317 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA1P55317 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA1P55317 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC13.45□□□□□ -0.26
FOXA1P55317 PTPA-218ENST00000435132 618 ntTSL 2 BASIC13.45□□□□□ -0.26
FOXA1P55317 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC13.45□□□□□ -0.26
FOXA1P55317 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA1P55317 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
FOXA1P55317 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC13.45□□□□□ -0.26
FOXA1P55317 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA1P55317 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC13.45□□□□□ -0.26
FOXA1P55317 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC13.45□□□□□ -0.26
FOXA1P55317 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC13.45□□□□□ -0.26
FOXA1P55317 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC13.45□□□□□ -0.26
FOXA1P55317 KRT8P1-201ENST00000557533 1207 ntBASIC13.45□□□□□ -0.26
FOXA1P55317 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC13.45□□□□□ -0.26
FOXA1P55317 IFT20-216ENST00000588477 774 ntTSL 5 BASIC13.45□□□□□ -0.26
FOXA1P55317 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC13.45□□□□□ -0.26
FOXA1P55317 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA1P55317 ABBA01031663.1-201ENST00000635630 790 ntBASIC13.45□□□□□ -0.26
FOXA1P55317 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC13.45□□□□□ -0.26
FOXA1P55317 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA1P55317 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA1P55317 ZSCAN32-202ENST00000396846 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA1P55317 AC004147.4-201ENST00000636421 1844 ntTSL 5 BASIC13.45□□□□□ -0.26
FOXA1P55317 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA1P55317 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC13.45□□□□□ -0.26
FOXA1P55317 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC13.45□□□□□ -0.26
FOXA1P55317 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC13.45□□□□□ -0.26
FOXA1P55317 PDE9A-202ENST00000328862 1956 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA1P55317 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC13.45□□□□□ -0.26
FOXA1P55317 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA1P55317 MARK2-205ENST00000408948 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA1P55317 PRAM1-201ENST00000423345 2667 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA1P55317 VPS54-203ENST00000409558 4337 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA1P55317 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA1P55317 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC13.45□□□□□ -0.26
FOXA1P55317 ACTN1-204ENST00000438964 3043 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA1P55317 KCNJ11-201ENST00000339994 2801 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
FOXA1P55317 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC13.44□□□□□ -0.26
FOXA1P55317 HAL-202ENST00000538703 2637 ntTSL 2 BASIC13.44□□□□□ -0.26
FOXA1P55317 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC13.44□□□□□ -0.26
FOXA1P55317 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC13.44□□□□□ -0.26
FOXA1P55317 ENOX1-201ENST00000261488 2982 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA1P55317 FAM214B-205ENST00000488109 2999 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms