Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 MIR34AHG-203ENST00000635687 4211 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 KRT8P28-201ENST00000433288 1390 ntBASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 DYSF-206ENST00000409744 6564 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 DYSF-209ENST00000410041 6594 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 HCFC1-202ENST00000369984 8375 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 GUK1-206ENST00000366723 845 ntTSL 5 BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 MIR1202-201ENST00000408529 83 ntBASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 NKAIN1P1-201ENST00000435754 582 ntBASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 RN7SL181P-201ENST00000462921 277 ntBASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 AC024681.1-201ENST00000521917 487 ntBASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 AC005586.2-201ENST00000563946 837 ntBASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 RN7SL774P-201ENST00000577467 290 ntBASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC11.71□□□□□ -0.53
PDLIM3Q53GG5 AC145098.2-201ENST00000623593 3026 ntBASIC11.71□□□□□ -0.54
PDLIM3Q53GG5 FBLN2-207ENST00000492059 4193 ntAPPRIS P4 TSL 2 BASIC11.71□□□□□ -0.54
PDLIM3Q53GG5 AL356585.2-201ENST00000625078 2396 ntBASIC11.71□□□□□ -0.54
PDLIM3Q53GG5 ATP7B-202ENST00000344297 5861 ntTSL 5 BASIC11.71□□□□□ -0.54
PDLIM3Q53GG5 EPN2-202ENST00000347697 4664 ntAPPRIS ALT1 TSL 5 BASIC11.71□□□□□ -0.54
PDLIM3Q53GG5 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC11.71□□□□□ -0.54
PDLIM3Q53GG5 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
PDLIM3Q53GG5 AC072061.1-201ENST00000569710 2234 ntBASIC11.71□□□□□ -0.54
PDLIM3Q53GG5 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC11.71□□□□□ -0.54
PDLIM3Q53GG5 MYO18B-202ENST00000407587 8090 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
PDLIM3Q53GG5 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC11.71□□□□□ -0.54
PDLIM3Q53GG5 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.54
PDLIM3Q53GG5 PRR26-201ENST00000381489 7250 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
PDLIM3Q53GG5 NTSR1-201ENST00000370501 4132 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
PDLIM3Q53GG5 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
PDLIM3Q53GG5 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 ZNF621-202ENST00000339296 6378 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 SPTB-203ENST00000389721 6705 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 ITGAL-201ENST00000356798 5213 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 DCDC2-202ENST00000378454 4707 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 PRDM16-208ENST00000514189 4236 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 HDLBP-204ENST00000391976 4489 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 TUBBP5-203ENST00000508529 1334 ntBASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 USP24-201ENST00000294383 10549 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 PIK3CD-202ENST00000377346 5203 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 PLEKHM1P1-202ENST00000578036 4318 ntTSL 2 BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 RGS12-201ENST00000336727 4674 ntAPPRIS P4 TSL 1 (best) BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 USP17L6P-201ENST00000382470 1197 ntBASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 RPSAP31-201ENST00000416648 895 ntBASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 CTBP2P4-201ENST00000513884 920 ntBASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 AC044849.1-201ENST00000519737 1188 ntBASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 TMEM104-204ENST00000582330 4679 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
PDLIM3Q53GG5 AC132192.2-201ENST00000596206 1147 ntBASIC11.7□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms