Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
CIITAP33076 ERG-211ENST00000453032 1595 ntTSL 2 BASIC15.58■□□□□ 0.09
CIITAP33076 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
CIITAP33076 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.09
CIITAP33076 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
CIITAP33076 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CIITAP33076 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CIITAP33076 ZFYVE19-215ENST00000570108 1669 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
CIITAP33076 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC15.58■□□□□ 0.08
CIITAP33076 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
CIITAP33076 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
CIITAP33076 EPB42-210ENST00000622454 2227 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CIITAP33076 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CIITAP33076 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC15.58■□□□□ 0.08
CIITAP33076 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
CIITAP33076 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC15.58■□□□□ 0.08
CIITAP33076 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CIITAP33076 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CIITAP33076 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CIITAP33076 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC15.58■□□□□ 0.08
CIITAP33076 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC15.58■□□□□ 0.08
CIITAP33076 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC15.58■□□□□ 0.08
CIITAP33076 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC15.58■□□□□ 0.08
CIITAP33076 AC004837.1-201ENST00000446267 564 ntBASIC15.58■□□□□ 0.08
CIITAP33076 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC15.58■□□□□ 0.08
CIITAP33076 AC079250.1-201ENST00000456046 531 ntBASIC15.58■□□□□ 0.08
CIITAP33076 PPIA-208ENST00000489459 907 ntTSL 2 BASIC15.58■□□□□ 0.08
CIITAP33076 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
CIITAP33076 AC093826.1-201ENST00000508655 993 ntBASIC15.58■□□□□ 0.08
CIITAP33076 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC15.58■□□□□ 0.08
CIITAP33076 Metazoa_SRP.141-201ENST00000615072 282 ntBASIC15.58■□□□□ 0.08
CIITAP33076 PPIA-210ENST00000620047 827 ntTSL 5 BASIC15.58■□□□□ 0.08
CIITAP33076 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
CIITAP33076 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CIITAP33076 SARS-201ENST00000234677 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CIITAP33076 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC15.58■□□□□ 0.08
CIITAP33076 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CIITAP33076 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
CIITAP33076 AC092115.1-201ENST00000566277 1402 ntBASIC15.58■□□□□ 0.08
CIITAP33076 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CIITAP33076 KRT17P4-205ENST00000579946 2555 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CIITAP33076 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CIITAP33076 ETNPPL-202ENST00000411864 2028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CIITAP33076 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CIITAP33076 PAX5-204ENST00000377852 1472 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
CIITAP33076 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CIITAP33076 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CIITAP33076 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CIITAP33076 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
CIITAP33076 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CIITAP33076 DNAJB6-204ENST00000429029 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CIITAP33076 SERPINH1-205ENST00000525876 2283 ntTSL 2 BASIC15.57■□□□□ 0.08
CIITAP33076 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC15.57■□□□□ 0.08
CIITAP33076 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC15.57■□□□□ 0.08
CIITAP33076 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
CIITAP33076 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CIITAP33076 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CIITAP33076 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CIITAP33076 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC15.57■□□□□ 0.08
CIITAP33076 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CIITAP33076 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CIITAP33076 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC15.57■□□□□ 0.08
CIITAP33076 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
CIITAP33076 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC15.57■□□□□ 0.08
CIITAP33076 AL772337.1-201ENST00000399186 2014 ntTSL 5 BASIC15.57■□□□□ 0.08
CIITAP33076 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CIITAP33076 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CIITAP33076 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC15.57■□□□□ 0.08
CIITAP33076 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CIITAP33076 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CIITAP33076 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CIITAP33076 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CIITAP33076 IGF1-203ENST00000392904 761 ntTSL 5 BASIC15.57■□□□□ 0.08
CIITAP33076 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CIITAP33076 ABCD1P4-201ENST00000399687 604 ntBASIC15.57■□□□□ 0.08
CIITAP33076 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CIITAP33076 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC15.57■□□□□ 0.08
CIITAP33076 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC15.57■□□□□ 0.08
CIITAP33076 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC15.57■□□□□ 0.08
CIITAP33076 GNG10P1-201ENST00000452289 199 ntBASIC15.57■□□□□ 0.08
CIITAP33076 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC15.57■□□□□ 0.08
CIITAP33076 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC15.57■□□□□ 0.08
CIITAP33076 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC15.57■□□□□ 0.08
CIITAP33076 IGHV3-37-201ENST00000518544 340 ntBASIC15.57■□□□□ 0.08
CIITAP33076 CD44-224ENST00000526669 870 ntTSL 5 BASIC15.57■□□□□ 0.08
CIITAP33076 DLK1-205ENST00000556051 469 ntTSL 2 BASIC15.57■□□□□ 0.08
CIITAP33076 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC15.57■□□□□ 0.08
CIITAP33076 COX5A-205ENST00000568517 582 ntTSL 3 BASIC15.57■□□□□ 0.08
CIITAP33076 AC068675.1-201ENST00000588996 561 ntTSL 4 BASIC15.57■□□□□ 0.08
CIITAP33076 AP003419.4-201ENST00000616071 517 ntBASIC15.57■□□□□ 0.08
CIITAP33076 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CIITAP33076 AL031056.1-202ENST00000635954 2193 ntTSL 5 BASIC15.57■□□□□ 0.08
CIITAP33076 CCDC178-201ENST00000300227 3087 ntAPPRIS P3 TSL 2 BASIC15.57■□□□□ 0.08
CIITAP33076 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CIITAP33076 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
CIITAP33076 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CIITAP33076 FUCA1P1-201ENST00000374476 1351 ntBASIC15.57■□□□□ 0.08
CIITAP33076 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CIITAP33076 DSN1-204ENST00000426836 2441 ntAPPRIS P3 TSL 2 BASIC15.57■□□□□ 0.08
CIITAP33076 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms