Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 KPNA3-201ENST00000261667 4474 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 STAT6-205ENST00000543873 3119 ntAPPRIS P1 TSL 2 BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 ANKRD20A4-201ENST00000357336 4137 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 CAV1-209ENST00000614113 3201 ntAPPRIS ALT1 TSL 1 (best) BASIC8.56□□□□□ -1.04
LINC00643Q86TS7 CTAGE5-202ENST00000280083 3860 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 DGCR8-202ENST00000383024 4419 ntTSL 5 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 FHAD1-202ENST00000358897 5090 ntAPPRIS P1 TSL 5 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 TGOLN2-206ENST00000444342 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 RCBTB2-206ENST00000544904 2984 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 RMND5B-210ENST00000515098 4066 ntAPPRIS P1 TSL 2 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 OTOF-205ENST00000403946 6937 ntAPPRIS ALT1 TSL 5 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 HSH2D-206ENST00000613986 1957 ntAPPRIS P1 TSL 2 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 LINC01624-203ENST00000607074 3265 ntTSL 2 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 ARHGAP40-202ENST00000373345 2841 ntAPPRIS P5 TSL 5 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 RNF13-203ENST00000392894 2843 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 MYO18A-202ENST00000527372 9992 ntAPPRIS P4 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 CDC25B-201ENST00000245960 3597 ntAPPRIS P4 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 ZNF135-201ENST00000313434 3025 ntAPPRIS ALT2 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 MORC2-202ENST00000397641 5181 ntAPPRIS P1 TSL 5 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 AC005537.1-203ENST00000629291 1748 ntTSL 5 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 CEP83-201ENST00000339839 3130 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 COL11A1-202ENST00000358392 7327 ntAPPRIS ALT1 TSL 5 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 ISL1-201ENST00000230658 2459 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 SYT2-201ENST00000367267 7614 ntAPPRIS P1 TSL 2 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 AC026469.1-201ENST00000621095 3306 ntBASIC8.55□□□□□ -1.04
LINC00643Q86TS7 ASPH-208ENST00000517856 6337 ntTSL 2 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 HSPA8P7-201ENST00000443628 1948 ntBASIC8.55□□□□□ -1.04
LINC00643Q86TS7 SALL4-201ENST00000217086 5208 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 LTF-201ENST00000231751 2979 ntAPPRIS P3 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 HLA-K-203ENST00000430151 1046 ntBASIC8.55□□□□□ -1.04
LINC00643Q86TS7 AL161932.2-201ENST00000435436 679 ntBASIC8.55□□□□□ -1.04
LINC00643Q86TS7 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 SLED1-202ENST00000512051 380 ntBASIC8.55□□□□□ -1.04
LINC00643Q86TS7 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 RPPH1-201ENST00000516869 333 ntBASIC8.55□□□□□ -1.04
LINC00643Q86TS7 PENK-204ENST00000518770 863 ntTSL 2 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 AC005586.2-201ENST00000563946 837 ntBASIC8.55□□□□□ -1.04
LINC00643Q86TS7 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 AC138894.3-201ENST00000603787 634 ntBASIC8.55□□□□□ -1.04
LINC00643Q86TS7 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 IKBKGP1-201ENST00000612193 1073 ntBASIC8.55□□□□□ -1.04
LINC00643Q86TS7 AC114341.1-201ENST00000618070 349 ntBASIC8.55□□□□□ -1.04
LINC00643Q86TS7 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC8.55□□□□□ -1.04
LINC00643Q86TS7 CMIP-203ENST00000539778 3937 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 SH3BP2-201ENST00000356331 9211 ntAPPRIS P3 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 ADCK1-201ENST00000238561 2234 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 C22orf46-201ENST00000402966 4975 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 ARSK-201ENST00000380009 3354 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 AC023449.2-201ENST00000620538 2400 ntBASIC8.55□□□□□ -1.04
LINC00643Q86TS7 SEC13-203ENST00000383801 1479 ntTSL 2 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 RCC2P1-201ENST00000452257 1476 ntBASIC8.55□□□□□ -1.04
LINC00643Q86TS7 RTEL1P1-201ENST00000504490 3685 ntBASIC8.55□□□□□ -1.04
LINC00643Q86TS7 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 DIAPH3-205ENST00000400324 4804 ntAPPRIS P3 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 PDLIM5-210ENST00000508216 1794 ntTSL 2 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 HADH-210ENST00000626637 1774 ntTSL 2 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 STRAP-202ENST00000419869 1866 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 PIGG-201ENST00000310340 3203 ntAPPRIS P3 TSL 2 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 OSBPL6-206ENST00000409045 3427 ntTSL 2 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 RSU1-201ENST00000345264 3834 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 KIAA0040-203ENST00000545251 2485 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 WDR83OS-202ENST00000596731 2562 ntAPPRIS P2 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 ANKRD36-201ENST00000420699 6269 ntAPPRIS P2 TSL 5 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 SLC25A25-AS1-201ENST00000418747 6391 ntTSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 GOLGA8DP-201ENST00000314246 2786 ntTSL 2 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 PLK4-210ENST00000514379 3060 ntTSL 2 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 RAP1GAP-201ENST00000290101 3584 ntTSL 5 BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 ST3GAL6-202ENST00000394162 3571 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 MADD-202ENST00000342922 6005 ntAPPRIS ALT2 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 NAGA-201ENST00000396398 3694 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.04
LINC00643Q86TS7 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC8.54□□□□□ -1.04
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms