Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
CLRN1P58418 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC12.51□□□□□ -0.41
CLRN1P58418 BX679664.3-201ENST00000414070 555 ntBASIC12.51□□□□□ -0.41
CLRN1P58418 CYP46A4P-201ENST00000414953 267 ntBASIC12.51□□□□□ -0.41
CLRN1P58418 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC12.51□□□□□ -0.41
CLRN1P58418 AC016700.1-201ENST00000429424 312 ntBASIC12.51□□□□□ -0.41
CLRN1P58418 AC005014.1-201ENST00000432006 2976 ntBASIC12.51□□□□□ -0.41
CLRN1P58418 AC113935.1-201ENST00000471722 555 ntBASIC12.51□□□□□ -0.41
CLRN1P58418 ARTN-209ENST00000479128 471 ntTSL 3 BASIC12.51□□□□□ -0.41
CLRN1P58418 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 AC005740.1-201ENST00000515639 522 ntBASIC12.51□□□□□ -0.41
CLRN1P58418 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
CLRN1P58418 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC12.51□□□□□ -0.41
CLRN1P58418 EMC4-209ENST00000559421 497 ntTSL 2 BASIC12.51□□□□□ -0.41
CLRN1P58418 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC12.51□□□□□ -0.41
CLRN1P58418 AC135782.3-201ENST00000562782 2105 ntBASIC12.51□□□□□ -0.41
CLRN1P58418 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC12.51□□□□□ -0.41
CLRN1P58418 MIR4538-201ENST00000581377 78 ntBASIC12.51□□□□□ -0.41
CLRN1P58418 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC12.51□□□□□ -0.41
CLRN1P58418 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC12.51□□□□□ -0.41
CLRN1P58418 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
CLRN1P58418 AL139424.3-202ENST00000641619 917 ntBASIC12.51□□□□□ -0.41
CLRN1P58418 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 GPRASP1-202ENST00000415986 5877 ntAPPRIS P1 TSL 4 BASIC12.51□□□□□ -0.41
CLRN1P58418 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC12.51□□□□□ -0.41
CLRN1P58418 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC12.51□□□□□ -0.41
CLRN1P58418 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
CLRN1P58418 FMO6P-201ENST00000236166 1620 ntBASIC12.51□□□□□ -0.41
CLRN1P58418 ABCD1P2-201ENST00000429313 1601 ntBASIC12.51□□□□□ -0.41
CLRN1P58418 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC12.51□□□□□ -0.41
CLRN1P58418 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC12.51□□□□□ -0.41
CLRN1P58418 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC12.51□□□□□ -0.41
CLRN1P58418 ICE1-201ENST00000296564 7927 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CLRN1P58418 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
CLRN1P58418 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CLRN1P58418 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLRN1P58418 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLRN1P58418 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLRN1P58418 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
CLRN1P58418 CICP17-201ENST00000418553 2377 ntBASIC12.5□□□□□ -0.41
CLRN1P58418 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLRN1P58418 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
CLRN1P58418 OXR1-202ENST00000312046 4406 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLRN1P58418 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC12.5□□□□□ -0.41
CLRN1P58418 FSTL4-207ENST00000621681 2660 ntTSL 5 BASIC12.5□□□□□ -0.41
CLRN1P58418 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC12.5□□□□□ -0.41
CLRN1P58418 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
CLRN1P58418 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLRN1P58418 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
CLRN1P58418 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLRN1P58418 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC12.5□□□□□ -0.41
CLRN1P58418 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC12.5□□□□□ -0.41
CLRN1P58418 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLRN1P58418 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLRN1P58418 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC12.5□□□□□ -0.41
CLRN1P58418 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLRN1P58418 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
CLRN1P58418 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CLRN1P58418 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLRN1P58418 LBH-202ENST00000401506 485 ntTSL 3 BASIC12.5□□□□□ -0.41
CLRN1P58418 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC12.5□□□□□ -0.41
CLRN1P58418 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC12.5□□□□□ -0.41
CLRN1P58418 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC12.5□□□□□ -0.41
CLRN1P58418 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC12.5□□□□□ -0.41
CLRN1P58418 PFN2-206ENST00000461930 606 ntTSL 4 BASIC12.5□□□□□ -0.41
CLRN1P58418 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CLRN1P58418 SLC25A15P3-201ENST00000505530 290 ntBASIC12.5□□□□□ -0.41
CLRN1P58418 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC12.5□□□□□ -0.41
CLRN1P58418 CD164-210ENST00000512821 964 ntTSL 2 BASIC12.5□□□□□ -0.41
CLRN1P58418 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
CLRN1P58418 POU5F1P2-201ENST00000521750 823 ntBASIC12.5□□□□□ -0.41
CLRN1P58418 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC12.5□□□□□ -0.41
CLRN1P58418 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC12.5□□□□□ -0.41
CLRN1P58418 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
CLRN1P58418 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC12.5□□□□□ -0.41
CLRN1P58418 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC12.5□□□□□ -0.41
CLRN1P58418 ELP5-212ENST00000574255 671 ntTSL 2 BASIC12.5□□□□□ -0.41
CLRN1P58418 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLRN1P58418 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
CLRN1P58418 MIR6869-201ENST00000619434 62 ntBASIC12.5□□□□□ -0.41
CLRN1P58418 AC015967.2-201ENST00000624092 234 ntBASIC12.5□□□□□ -0.41
CLRN1P58418 AC006435.4-201ENST00000625037 234 ntBASIC12.5□□□□□ -0.41
CLRN1P58418 AL356737.1-201ENST00000634391 234 ntBASIC12.5□□□□□ -0.41
CLRN1P58418 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CLRN1P58418 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLRN1P58418 AC004554.1-201ENST00000422830 1468 ntBASIC12.5□□□□□ -0.41
CLRN1P58418 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLRN1P58418 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC12.5□□□□□ -0.41
CLRN1P58418 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC12.5□□□□□ -0.41
CLRN1P58418 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC12.5□□□□□ -0.41
CLRN1P58418 SNED1-201ENST00000310397 8174 ntAPPRIS P2 TSL 5 BASIC12.5□□□□□ -0.41
CLRN1P58418 TMEM131L-203ENST00000409959 5017 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
CLRN1P58418 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLRN1P58418 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms