Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 STK3-218ENST00000617590 2485 ntTSL 5 BASIC13.25□□□□□ -0.29
CLK1P49759 KCNMA1-291ENST00000640834 3664 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
CLK1P49759 TASP1-201ENST00000337743 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC13.25□□□□□ -0.29
CLK1P49759 ZNF180-201ENST00000221327 4335 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 SEZ6L-201ENST00000248933 3248 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 SEZ6L-210ENST00000629590 3215 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 SNRK-201ENST00000296088 5183 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 HLCS-207ENST00000612277 6112 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
CLK1P49759 LRRC17-201ENST00000249377 2002 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 SLC4A1-201ENST00000262418 4965 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 HDLBP-214ENST00000427183 6238 ntTSL 2 BASIC13.25□□□□□ -0.29
CLK1P49759 USP38-201ENST00000307017 7009 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CLK1P49759 FAM187A-201ENST00000331733 3397 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 CCDC103-204ENST00000417826 3397 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 CYB5A-202ENST00000340533 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 DPY19L2P2-205ENST00000439473 3994 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 BHLHE40-AS1-204ENST00000620618 2355 ntTSL 2 BASIC13.24□□□□□ -0.29
CLK1P49759 POM121L14P-201ENST00000406100 1558 ntBASIC13.24□□□□□ -0.29
CLK1P49759 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
CLK1P49759 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 CAMTA2-204ENST00000414043 4589 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
CLK1P49759 POC5-202ENST00000428202 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC13.24□□□□□ -0.29
CLK1P49759 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC13.24□□□□□ -0.29
CLK1P49759 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
CLK1P49759 TUBGCP2-210ENST00000543663 4302 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 LSM14A-203ENST00000544216 3596 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC13.24□□□□□ -0.29
CLK1P49759 GPC4-201ENST00000370828 4960 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 GPA33-201ENST00000367868 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 DNMT1-203ENST00000540357 4916 ntTSL 5 BASIC13.24□□□□□ -0.29
CLK1P49759 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 KRT8P28-201ENST00000433288 1390 ntBASIC13.24□□□□□ -0.29
CLK1P49759 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC13.24□□□□□ -0.29
CLK1P49759 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
CLK1P49759 PJA1-203ENST00000374583 2692 ntAPPRIS P4 BASIC13.24□□□□□ -0.29
CLK1P49759 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
CLK1P49759 DYNC1I2-203ENST00000409197 2572 ntAPPRIS P4 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 DYNC1I2-206ENST00000409773 2583 ntTSL 2 BASIC13.24□□□□□ -0.29
CLK1P49759 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
CLK1P49759 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 MIR326-201ENST00000362220 95 ntBASIC13.24□□□□□ -0.29
CLK1P49759 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC13.24□□□□□ -0.29
CLK1P49759 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
CLK1P49759 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC13.24□□□□□ -0.29
CLK1P49759 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC13.24□□□□□ -0.29
CLK1P49759 AC100850.1-201ENST00000506768 649 ntBASIC13.24□□□□□ -0.29
CLK1P49759 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC13.24□□□□□ -0.29
CLK1P49759 SORD2P-201ENST00000558556 1069 ntBASIC13.24□□□□□ -0.29
CLK1P49759 AC027237.1-201ENST00000560942 655 ntBASIC13.24□□□□□ -0.29
CLK1P49759 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC13.24□□□□□ -0.29
CLK1P49759 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC13.24□□□□□ -0.29
CLK1P49759 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC13.24□□□□□ -0.29
CLK1P49759 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC13.24□□□□□ -0.29
CLK1P49759 AL359881.2-201ENST00000602973 570 ntBASIC13.24□□□□□ -0.29
CLK1P49759 DFFA-202ENST00000377038 6032 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 TTK-201ENST00000230510 3477 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
CLK1P49759 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC13.24□□□□□ -0.29
CLK1P49759 NF1-204ENST00000431387 2889 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 NOX5-202ENST00000388866 2804 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC13.24□□□□□ -0.29
CLK1P49759 AC010547.1-201ENST00000500612 2793 ntTSL 2 BASIC13.24□□□□□ -0.29
CLK1P49759 PRPF40B-209ENST00000548825 3307 ntAPPRIS P2 TSL 5 BASIC13.24□□□□□ -0.29
CLK1P49759 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 LOXL4-201ENST00000260702 3653 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CLK1P49759 PNPLA6-204ENST00000545201 4502 ntTSL 2 BASIC13.23□□□□□ -0.29
CLK1P49759 GUCY1B3-205ENST00000505764 2456 ntTSL 2 BASIC13.23□□□□□ -0.29
CLK1P49759 MKRN5P-201ENST00000445263 1467 ntBASIC13.23□□□□□ -0.29
CLK1P49759 RGL4-202ENST00000401461 2420 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
CLK1P49759 SNX12-202ENST00000374274 2376 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLK1P49759 ITGAX-201ENST00000268296 4703 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLK1P49759 CANX-202ENST00000452673 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLK1P49759 PCDHA6-201ENST00000378126 3267 ntBASIC13.23□□□□□ -0.29
CLK1P49759 SLC5A8-201ENST00000536262 4178 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLK1P49759 DNAJA4-203ENST00000394855 3245 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CLK1P49759 TSPAN31-201ENST00000257910 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CLK1P49759 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC13.23□□□□□ -0.29
CLK1P49759 RAB37-205ENST00000392614 2704 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
CLK1P49759 VENTXP1-201ENST00000569334 2716 ntBASIC13.23□□□□□ -0.29
CLK1P49759 RGL4-209ENST00000612432 2649 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
CLK1P49759 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC13.23□□□□□ -0.29
CLK1P49759 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC13.23□□□□□ -0.29
CLK1P49759 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CLK1P49759 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CLK1P49759 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms