Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SMARCA1P28370 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
SMARCA1P28370 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SMARCA1P28370 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC15.86■□□□□ 0.13
SMARCA1P28370 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
SMARCA1P28370 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SMARCA1P28370 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
SMARCA1P28370 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SMARCA1P28370 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
SMARCA1P28370 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
SMARCA1P28370 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC15.86■□□□□ 0.13
SMARCA1P28370 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
SMARCA1P28370 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC15.86■□□□□ 0.13
SMARCA1P28370 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
SMARCA1P28370 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
SMARCA1P28370 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
SMARCA1P28370 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC15.85■□□□□ 0.13
SMARCA1P28370 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC15.85■□□□□ 0.13
SMARCA1P28370 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SMARCA1P28370 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SMARCA1P28370 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SMARCA1P28370 NT5DC4-201ENST00000327581 1767 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SMARCA1P28370 AC139795.2-201ENST00000499900 1751 ntTSL 2 BASIC15.85■□□□□ 0.13
SMARCA1P28370 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC15.85■□□□□ 0.13
SMARCA1P28370 MCF2L-209ENST00000397036 1544 ntTSL 2 BASIC15.85■□□□□ 0.13
SMARCA1P28370 AC021305.1-201ENST00000520656 1514 ntBASIC15.85■□□□□ 0.13
SMARCA1P28370 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SMARCA1P28370 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SMARCA1P28370 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC15.85■□□□□ 0.13
SMARCA1P28370 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC15.85■□□□□ 0.13
SMARCA1P28370 AL031056.1-202ENST00000635954 2193 ntTSL 5 BASIC15.85■□□□□ 0.13
SMARCA1P28370 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.85■□□□□ 0.13
SMARCA1P28370 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.85■□□□□ 0.13
SMARCA1P28370 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC15.85■□□□□ 0.13
SMARCA1P28370 KIR2DL3-201ENST00000342376 1590 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SMARCA1P28370 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC15.85■□□□□ 0.13
SMARCA1P28370 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SMARCA1P28370 BAK1P1-201ENST00000317045 636 ntBASIC15.85■□□□□ 0.13
SMARCA1P28370 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SMARCA1P28370 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SMARCA1P28370 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SMARCA1P28370 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SMARCA1P28370 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
SMARCA1P28370 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC15.85■□□□□ 0.13
SMARCA1P28370 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC15.85■□□□□ 0.13
SMARCA1P28370 AC004837.1-201ENST00000446267 564 ntBASIC15.85■□□□□ 0.13
SMARCA1P28370 PRSS55-203ENST00000522210 1005 ntTSL 2 BASIC15.85■□□□□ 0.13
SMARCA1P28370 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC15.85■□□□□ 0.13
SMARCA1P28370 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
SMARCA1P28370 AC005777.1-201ENST00000588332 187 ntBASIC15.85■□□□□ 0.13
SMARCA1P28370 AL136982.5-201ENST00000605222 294 ntBASIC15.85■□□□□ 0.13
SMARCA1P28370 COQ4-204ENST00000608951 781 ntTSL 2 BASIC15.85■□□□□ 0.13
SMARCA1P28370 AL118522.1-201ENST00000611368 560 ntBASIC15.85■□□□□ 0.13
SMARCA1P28370 AC138466.5-201ENST00000624002 808 ntBASIC15.85■□□□□ 0.13
SMARCA1P28370 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
SMARCA1P28370 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
SMARCA1P28370 DDC-212ENST00000615193 1674 ntTSL 3 BASIC15.85■□□□□ 0.13
SMARCA1P28370 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC15.85■□□□□ 0.13
SMARCA1P28370 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.85■□□□□ 0.13
SMARCA1P28370 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SMARCA1P28370 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
SMARCA1P28370 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC15.85■□□□□ 0.13
SMARCA1P28370 HADH-202ENST00000403312 1752 ntTSL 5 BASIC15.85■□□□□ 0.13
SMARCA1P28370 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
SMARCA1P28370 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC15.85■□□□□ 0.13
SMARCA1P28370 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
SMARCA1P28370 STK25-235ENST00000543554 2556 ntTSL 2 BASIC15.84■□□□□ 0.13
SMARCA1P28370 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SMARCA1P28370 EML1-203ENST00000334192 4064 ntTSL 5 BASIC15.84■□□□□ 0.13
SMARCA1P28370 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
SMARCA1P28370 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SMARCA1P28370 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SMARCA1P28370 MRPS9-201ENST00000258455 1500 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SMARCA1P28370 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
SMARCA1P28370 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
SMARCA1P28370 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SMARCA1P28370 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SMARCA1P28370 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC15.84■□□□□ 0.13
SMARCA1P28370 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SMARCA1P28370 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
SMARCA1P28370 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SMARCA1P28370 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
SMARCA1P28370 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SMARCA1P28370 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC15.84■□□□□ 0.13
SMARCA1P28370 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC15.84■□□□□ 0.13
SMARCA1P28370 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SMARCA1P28370 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
SMARCA1P28370 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SMARCA1P28370 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC15.84■□□□□ 0.13
SMARCA1P28370 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SMARCA1P28370 TUBB2BP1-201ENST00000404155 871 ntBASIC15.84■□□□□ 0.13
SMARCA1P28370 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC15.84■□□□□ 0.13
SMARCA1P28370 PSAT1P2-201ENST00000426107 972 ntBASIC15.84■□□□□ 0.13
SMARCA1P28370 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC15.84■□□□□ 0.13
SMARCA1P28370 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC15.84■□□□□ 0.13
SMARCA1P28370 PPIA-208ENST00000489459 907 ntTSL 2 BASIC15.84■□□□□ 0.13
SMARCA1P28370 RPS23-207ENST00000511844 530 ntTSL 2 BASIC15.84■□□□□ 0.13
SMARCA1P28370 IGHV3-37-201ENST00000518544 340 ntBASIC15.84■□□□□ 0.13
SMARCA1P28370 LINC02376-201ENST00000536330 724 ntTSL 3 BASIC15.84■□□□□ 0.13
SMARCA1P28370 FOXN3-AS2-201ENST00000554071 1262 ntBASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 185.3 ms