Protein–RNA interactions for Protein: Q8NC44

RETREG2, Reticulophagy regulator 2, humanhuman

Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG2Q8NC44 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
RETREG2Q8NC44 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC25.36■■□□□ 1.65
RETREG2Q8NC44 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
RETREG2Q8NC44 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
RETREG2Q8NC44 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
RETREG2Q8NC44 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
RETREG2Q8NC44 CASK-201ENST00000378154 2494 ntTSL 5 BASIC25.35■■□□□ 1.65
RETREG2Q8NC44 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC25.35■■□□□ 1.65
RETREG2Q8NC44 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC25.35■■□□□ 1.65
RETREG2Q8NC44 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC25.35■■□□□ 1.65
RETREG2Q8NC44 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC25.35■■□□□ 1.65
RETREG2Q8NC44 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC25.35■■□□□ 1.65
RETREG2Q8NC44 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
RETREG2Q8NC44 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
RETREG2Q8NC44 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
RETREG2Q8NC44 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
RETREG2Q8NC44 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC25.34■■□□□ 1.65
RETREG2Q8NC44 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC25.34■■□□□ 1.65
RETREG2Q8NC44 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
RETREG2Q8NC44 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC25.34■■□□□ 1.65
RETREG2Q8NC44 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
RETREG2Q8NC44 PTCHD3P2-201ENST00000424937 1205 ntBASIC25.34■■□□□ 1.65
RETREG2Q8NC44 AC027682.1-201ENST00000562846 899 ntBASIC25.34■■□□□ 1.65
RETREG2Q8NC44 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
RETREG2Q8NC44 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC25.34■■□□□ 1.65
RETREG2Q8NC44 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC25.34■■□□□ 1.65
RETREG2Q8NC44 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC25.34■■□□□ 1.65
RETREG2Q8NC44 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC25.34■■□□□ 1.65
RETREG2Q8NC44 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
RETREG2Q8NC44 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
RETREG2Q8NC44 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
RETREG2Q8NC44 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC25.33■■□□□ 1.65
RETREG2Q8NC44 AL138724.1-201ENST00000606771 1088 ntBASIC25.33■■□□□ 1.65
RETREG2Q8NC44 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC25.33■■□□□ 1.65
RETREG2Q8NC44 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
RETREG2Q8NC44 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
RETREG2Q8NC44 AC008764.7-201ENST00000593779 1081 ntBASIC25.32■■□□□ 1.64
RETREG2Q8NC44 AC011298.3-201ENST00000615796 283 ntBASIC25.32■■□□□ 1.64
RETREG2Q8NC44 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC25.32■■□□□ 1.64
RETREG2Q8NC44 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC25.32■■□□□ 1.64
RETREG2Q8NC44 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC25.32■■□□□ 1.64
RETREG2Q8NC44 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
RETREG2Q8NC44 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC25.32■■□□□ 1.64
RETREG2Q8NC44 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC25.32■■□□□ 1.64
RETREG2Q8NC44 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC25.31■■□□□ 1.64
RETREG2Q8NC44 ABCB10P4-201ENST00000566803 2184 ntBASIC25.31■■□□□ 1.64
RETREG2Q8NC44 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC25.31■■□□□ 1.64
RETREG2Q8NC44 DUSP8P5-201ENST00000422884 1815 ntBASIC25.31■■□□□ 1.64
RETREG2Q8NC44 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
RETREG2Q8NC44 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC25.31■■□□□ 1.64
RETREG2Q8NC44 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC25.31■■□□□ 1.64
RETREG2Q8NC44 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC25.31■■□□□ 1.64
RETREG2Q8NC44 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
RETREG2Q8NC44 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
RETREG2Q8NC44 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC25.3■■□□□ 1.64
RETREG2Q8NC44 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
RETREG2Q8NC44 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC25.3■■□□□ 1.64
RETREG2Q8NC44 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
RETREG2Q8NC44 AC087623.3-201ENST00000607047 1098 ntBASIC25.3■■□□□ 1.64
RETREG2Q8NC44 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
RETREG2Q8NC44 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
RETREG2Q8NC44 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
RETREG2Q8NC44 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC25.3■■□□□ 1.64
RETREG2Q8NC44 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
RETREG2Q8NC44 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC25.29■■□□□ 1.64
RETREG2Q8NC44 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC25.29■■□□□ 1.64
RETREG2Q8NC44 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
RETREG2Q8NC44 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC25.29■■□□□ 1.64
RETREG2Q8NC44 IRS3P-201ENST00000223076 1006 ntBASIC25.29■■□□□ 1.64
RETREG2Q8NC44 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
RETREG2Q8NC44 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
RETREG2Q8NC44 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
RETREG2Q8NC44 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
RETREG2Q8NC44 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
RETREG2Q8NC44 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
RETREG2Q8NC44 GLI3-203ENST00000437480 451 ntTSL 2 BASIC25.28■■□□□ 1.64
RETREG2Q8NC44 PLD4-205ENST00000553861 667 ntTSL 2 BASIC25.28■■□□□ 1.64
RETREG2Q8NC44 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC25.28■■□□□ 1.64
RETREG2Q8NC44 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC25.28■■□□□ 1.64
RETREG2Q8NC44 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC25.28■■□□□ 1.64
RETREG2Q8NC44 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC25.28■■□□□ 1.64
RETREG2Q8NC44 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC25.28■■□□□ 1.64
RETREG2Q8NC44 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC25.28■■□□□ 1.64
RETREG2Q8NC44 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC25.27■■□□□ 1.64
RETREG2Q8NC44 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC25.27■■□□□ 1.64
RETREG2Q8NC44 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
RETREG2Q8NC44 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC25.27■■□□□ 1.64
RETREG2Q8NC44 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC25.27■■□□□ 1.64
RETREG2Q8NC44 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC25.27■■□□□ 1.64
RETREG2Q8NC44 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC25.27■■□□□ 1.64
RETREG2Q8NC44 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC25.27■■□□□ 1.64
RETREG2Q8NC44 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
RETREG2Q8NC44 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
RETREG2Q8NC44 AC009102.2-201ENST00000606772 1639 ntBASIC25.26■■□□□ 1.63
RETREG2Q8NC44 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
RETREG2Q8NC44 AC133561.1-201ENST00000568600 2415 ntBASIC25.26■■□□□ 1.63
RETREG2Q8NC44 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC25.26■■□□□ 1.63
RETREG2Q8NC44 AC068473.5-201ENST00000616428 2072 ntBASIC25.26■■□□□ 1.63
RETREG2Q8NC44 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
RETREG2Q8NC44 AL162430.1-201ENST00000480705 870 ntBASIC25.26■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms