Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
CCDC65Q8IXS2 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC24.87■■□□□ 1.57
CCDC65Q8IXS2 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
CCDC65Q8IXS2 GRAMD4P7-201ENST00000578182 1232 ntBASIC24.87■■□□□ 1.57
CCDC65Q8IXS2 AC009102.2-201ENST00000606772 1639 ntBASIC24.86■■□□□ 1.57
CCDC65Q8IXS2 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC24.86■■□□□ 1.57
CCDC65Q8IXS2 ME2-208ENST00000638937 2471 ntTSL 5 BASIC24.86■■□□□ 1.57
CCDC65Q8IXS2 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC24.86■■□□□ 1.57
CCDC65Q8IXS2 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
CCDC65Q8IXS2 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC24.86■■□□□ 1.57
CCDC65Q8IXS2 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC24.86■■□□□ 1.57
CCDC65Q8IXS2 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC24.86■■□□□ 1.57
CCDC65Q8IXS2 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
CCDC65Q8IXS2 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC24.85■■□□□ 1.57
CCDC65Q8IXS2 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
CCDC65Q8IXS2 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
CCDC65Q8IXS2 AL353803.4-201ENST00000565882 1934 ntBASIC24.85■■□□□ 1.57
CCDC65Q8IXS2 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC24.85■■□□□ 1.57
CCDC65Q8IXS2 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
CCDC65Q8IXS2 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
CCDC65Q8IXS2 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC24.85■■□□□ 1.57
CCDC65Q8IXS2 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC24.85■■□□□ 1.57
CCDC65Q8IXS2 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC24.85■■□□□ 1.57
CCDC65Q8IXS2 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
CCDC65Q8IXS2 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
CCDC65Q8IXS2 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
CCDC65Q8IXS2 LTK-203ENST00000453182 2412 ntTSL 2 BASIC24.84■■□□□ 1.57
CCDC65Q8IXS2 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC24.84■■□□□ 1.57
CCDC65Q8IXS2 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CCDC65Q8IXS2 AK3-203ENST00000447596 705 ntTSL 2 BASIC24.84■■□□□ 1.57
CCDC65Q8IXS2 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC24.84■■□□□ 1.57
CCDC65Q8IXS2 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
CCDC65Q8IXS2 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
CCDC65Q8IXS2 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC24.83■■□□□ 1.57
CCDC65Q8IXS2 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.57
CCDC65Q8IXS2 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
CCDC65Q8IXS2 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
CCDC65Q8IXS2 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
CCDC65Q8IXS2 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC24.83■■□□□ 1.57
CCDC65Q8IXS2 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
CCDC65Q8IXS2 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC24.83■■□□□ 1.57
CCDC65Q8IXS2 AC068473.5-201ENST00000616428 2072 ntBASIC24.82■■□□□ 1.56
CCDC65Q8IXS2 FP325331.1-202ENST00000623531 1380 ntBASIC24.82■■□□□ 1.56
CCDC65Q8IXS2 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC24.82■■□□□ 1.56
CCDC65Q8IXS2 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
CCDC65Q8IXS2 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CCDC65Q8IXS2 C9orf163-202ENST00000624034 2573 ntBASIC24.82■■□□□ 1.56
CCDC65Q8IXS2 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CCDC65Q8IXS2 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC24.82■■□□□ 1.56
CCDC65Q8IXS2 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC24.82■■□□□ 1.56
CCDC65Q8IXS2 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CCDC65Q8IXS2 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC65Q8IXS2 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC24.81■■□□□ 1.56
CCDC65Q8IXS2 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC24.81■■□□□ 1.56
CCDC65Q8IXS2 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC24.81■■□□□ 1.56
CCDC65Q8IXS2 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC65Q8IXS2 ASB1-202ENST00000409297 878 ntTSL 5 BASIC24.81■■□□□ 1.56
CCDC65Q8IXS2 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC24.81■■□□□ 1.56
CCDC65Q8IXS2 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC65Q8IXS2 NKILA-201ENST00000613231 537 ntTSL 4 BASIC24.81■■□□□ 1.56
CCDC65Q8IXS2 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CCDC65Q8IXS2 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC24.8■■□□□ 1.56
CCDC65Q8IXS2 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
CCDC65Q8IXS2 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC24.8■■□□□ 1.56
CCDC65Q8IXS2 AL356740.2-201ENST00000601559 647 ntBASIC24.8■■□□□ 1.56
CCDC65Q8IXS2 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC24.8■■□□□ 1.56
CCDC65Q8IXS2 LINC01529-204ENST00000636474 1715 ntBASIC24.8■■□□□ 1.56
CCDC65Q8IXS2 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC24.79■■□□□ 1.56
CCDC65Q8IXS2 AL356441.2-201ENST00000443009 864 ntBASIC24.79■■□□□ 1.56
CCDC65Q8IXS2 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC24.79■■□□□ 1.56
CCDC65Q8IXS2 AL117332.1-201ENST00000622628 974 ntBASIC24.79■■□□□ 1.56
CCDC65Q8IXS2 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC65Q8IXS2 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
CCDC65Q8IXS2 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC65Q8IXS2 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC65Q8IXS2 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC65Q8IXS2 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC65Q8IXS2 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC65Q8IXS2 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC65Q8IXS2 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC24.79■■□□□ 1.56
CCDC65Q8IXS2 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC24.78■■□□□ 1.56
CCDC65Q8IXS2 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC24.78■■□□□ 1.56
CCDC65Q8IXS2 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC24.78■■□□□ 1.56
CCDC65Q8IXS2 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC24.78■■□□□ 1.56
CCDC65Q8IXS2 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CCDC65Q8IXS2 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
CCDC65Q8IXS2 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC24.77■■□□□ 1.56
CCDC65Q8IXS2 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC24.77■■□□□ 1.56
CCDC65Q8IXS2 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC24.77■■□□□ 1.56
CCDC65Q8IXS2 C17orf82-201ENST00000623772 1530 ntBASIC24.77■■□□□ 1.56
CCDC65Q8IXS2 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC24.77■■□□□ 1.56
CCDC65Q8IXS2 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC24.77■■□□□ 1.56
CCDC65Q8IXS2 MIR3621-201ENST00000580529 85 ntBASIC24.77■■□□□ 1.56
CCDC65Q8IXS2 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
CCDC65Q8IXS2 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
CCDC65Q8IXS2 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC24.77■■□□□ 1.56
CCDC65Q8IXS2 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
CCDC65Q8IXS2 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC24.76■■□□□ 1.55
CCDC65Q8IXS2 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
CCDC65Q8IXS2 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms