Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC25.65■■□□□ 1.7
HTTP42858 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
HTTP42858 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
HTTP42858 AC004854.2-201ENST00000608450 1441 ntBASIC25.65■■□□□ 1.7
HTTP42858 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC25.65■■□□□ 1.7
HTTP42858 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC25.65■■□□□ 1.7
HTTP42858 DET1-205ENST00000558413 583 ntTSL 4 BASIC25.65■■□□□ 1.7
HTTP42858 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC25.65■■□□□ 1.7
HTTP42858 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
HTTP42858 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC25.65■■□□□ 1.7
HTTP42858 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
HTTP42858 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC25.65■■□□□ 1.7
HTTP42858 AC091060.1-201ENST00000623524 1766 ntBASIC25.64■■□□□ 1.7
HTTP42858 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC25.64■■□□□ 1.7
HTTP42858 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC25.64■■□□□ 1.7
HTTP42858 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC25.64■■□□□ 1.7
HTTP42858 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC25.64■■□□□ 1.7
HTTP42858 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC25.64■■□□□ 1.7
HTTP42858 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC25.64■■□□□ 1.69
HTTP42858 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC25.64■■□□□ 1.69
HTTP42858 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC25.64■■□□□ 1.69
HTTP42858 GALNS-213ENST00000569433 723 ntTSL 3 BASIC25.64■■□□□ 1.69
HTTP42858 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.69
HTTP42858 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC25.64■■□□□ 1.69
HTTP42858 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC25.63■■□□□ 1.69
HTTP42858 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
HTTP42858 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
HTTP42858 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
HTTP42858 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC25.63■■□□□ 1.69
HTTP42858 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC25.63■■□□□ 1.69
HTTP42858 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
HTTP42858 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
HTTP42858 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
HTTP42858 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
HTTP42858 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
HTTP42858 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC25.62■■□□□ 1.69
HTTP42858 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC25.62■■□□□ 1.69
HTTP42858 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC25.62■■□□□ 1.69
HTTP42858 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC25.62■■□□□ 1.69
HTTP42858 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC25.62■■□□□ 1.69
HTTP42858 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC25.62■■□□□ 1.69
HTTP42858 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
HTTP42858 AL022069.1-201ENST00000568025 1636 ntBASIC25.61■■□□□ 1.69
HTTP42858 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.69
HTTP42858 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC25.61■■□□□ 1.69
HTTP42858 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
HTTP42858 AC133637.1-201ENST00000624115 1537 ntBASIC25.61■■□□□ 1.69
HTTP42858 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
HTTP42858 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
HTTP42858 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC25.61■■□□□ 1.69
HTTP42858 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC25.61■■□□□ 1.69
HTTP42858 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
HTTP42858 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC25.61■■□□□ 1.69
HTTP42858 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
HTTP42858 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
HTTP42858 GPX1P1-201ENST00000388829 606 ntBASIC25.6■■□□□ 1.69
HTTP42858 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
HTTP42858 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
HTTP42858 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC25.59■■□□□ 1.69
HTTP42858 BID-214ENST00000617586 542 ntTSL 5 BASIC25.59■■□□□ 1.69
HTTP42858 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC25.59■■□□□ 1.69
HTTP42858 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC25.59■■□□□ 1.69
HTTP42858 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
HTTP42858 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC25.59■■□□□ 1.69
HTTP42858 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC25.59■■□□□ 1.69
HTTP42858 AL050303.2-201ENST00000619798 666 ntBASIC25.59■■□□□ 1.69
HTTP42858 CD37-213ENST00000598095 1598 ntTSL 2 BASIC25.58■■□□□ 1.69
HTTP42858 PARP1-210ENST00000629232 477 ntTSL 5 BASIC25.58■■□□□ 1.69
HTTP42858 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
HTTP42858 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC25.57■■□□□ 1.68
HTTP42858 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC25.57■■□□□ 1.68
HTTP42858 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
HTTP42858 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC25.57■■□□□ 1.68
HTTP42858 LHPP-203ENST00000392757 840 ntTSL 3 BASIC25.57■■□□□ 1.68
HTTP42858 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC25.57■■□□□ 1.68
HTTP42858 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
HTTP42858 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC25.57■■□□□ 1.68
HTTP42858 ARL16-209ENST00000573715 763 ntTSL 3 BASIC25.57■■□□□ 1.68
HTTP42858 ARL16-211ENST00000576135 694 ntTSL 3 BASIC25.57■■□□□ 1.68
HTTP42858 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
HTTP42858 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC25.56■■□□□ 1.68
HTTP42858 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC25.56■■□□□ 1.68
HTTP42858 COX20-201ENST00000366528 568 ntTSL 2 BASIC25.56■■□□□ 1.68
HTTP42858 APTR-205ENST00000447009 902 ntTSL 2 BASIC25.56■■□□□ 1.68
HTTP42858 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC25.56■■□□□ 1.68
HTTP42858 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC25.56■■□□□ 1.68
HTTP42858 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC25.56■■□□□ 1.68
HTTP42858 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC25.56■■□□□ 1.68
HTTP42858 KLF13-207ENST00000560473 489 ntTSL 3 BASIC25.56■■□□□ 1.68
HTTP42858 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
HTTP42858 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC25.56■■□□□ 1.68
HTTP42858 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC25.56■■□□□ 1.68
HTTP42858 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
HTTP42858 AC098934.4-201ENST00000564127 592 ntBASIC25.55■■□□□ 1.68
HTTP42858 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC25.55■■□□□ 1.68
HTTP42858 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
HTTP42858 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
HTTP42858 STK32C-205ENST00000456004 607 ntTSL 2 BASIC25.55■■□□□ 1.68
HTTP42858 AL138781.1-201ENST00000566567 1274 ntBASIC25.55■■□□□ 1.68
HTTP42858 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC25.55■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms