Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 DUX4L14-201ENST00000621227 1267 ntBASIC17.36■□□□□ 0.37
CXCL1P09341 MED25-214ENST00000622402 642 ntTSL 5 BASIC17.36■□□□□ 0.37
CXCL1P09341 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC17.36■□□□□ 0.37
CXCL1P09341 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC17.36■□□□□ 0.37
CXCL1P09341 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CXCL1P09341 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CXCL1P09341 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
CXCL1P09341 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
CXCL1P09341 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CXCL1P09341 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CXCL1P09341 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CXCL1P09341 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC17.36■□□□□ 0.37
CXCL1P09341 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL1P09341 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL1P09341 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL1P09341 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC17.35■□□□□ 0.37
CXCL1P09341 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
CXCL1P09341 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC17.35■□□□□ 0.37
CXCL1P09341 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL1P09341 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC17.35■□□□□ 0.37
CXCL1P09341 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC17.35■□□□□ 0.37
CXCL1P09341 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL1P09341 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC17.35■□□□□ 0.37
CXCL1P09341 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC17.35■□□□□ 0.37
CXCL1P09341 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
CXCL1P09341 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC17.35■□□□□ 0.37
CXCL1P09341 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL1P09341 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL1P09341 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL1P09341 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL1P09341 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
CXCL1P09341 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CXCL1P09341 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CXCL1P09341 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC17.34■□□□□ 0.37
CXCL1P09341 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CXCL1P09341 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
CXCL1P09341 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CXCL1P09341 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CXCL1P09341 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CXCL1P09341 HES6-205ENST00000409356 528 ntTSL 2 BASIC17.34■□□□□ 0.37
CXCL1P09341 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CXCL1P09341 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CXCL1P09341 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CXCL1P09341 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
CXCL1P09341 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CXCL1P09341 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CXCL1P09341 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC17.33■□□□□ 0.37
CXCL1P09341 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CXCL1P09341 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CXCL1P09341 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
CXCL1P09341 AC005229.4-201ENST00000610085 2198 ntBASIC17.33■□□□□ 0.37
CXCL1P09341 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CXCL1P09341 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CXCL1P09341 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CXCL1P09341 AC092053.2-201ENST00000640557 1818 ntBASIC17.33■□□□□ 0.37
CXCL1P09341 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC17.33■□□□□ 0.37
CXCL1P09341 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
CXCL1P09341 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CXCL1P09341 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CXCL1P09341 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CXCL1P09341 ESRRAP2-201ENST00000418437 1549 ntBASIC17.33■□□□□ 0.37
CXCL1P09341 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CXCL1P09341 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CXCL1P09341 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CXCL1P09341 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CXCL1P09341 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
CXCL1P09341 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC17.33■□□□□ 0.36
CXCL1P09341 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CXCL1P09341 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CXCL1P09341 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CXCL1P09341 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CXCL1P09341 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CXCL1P09341 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CXCL1P09341 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CXCL1P09341 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CXCL1P09341 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CXCL1P09341 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CXCL1P09341 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CXCL1P09341 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
CXCL1P09341 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CXCL1P09341 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC17.32■□□□□ 0.36
CXCL1P09341 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CXCL1P09341 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CXCL1P09341 AC139530.1-201ENST00000575312 1977 ntBASIC17.31■□□□□ 0.36
CXCL1P09341 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CXCL1P09341 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC17.31■□□□□ 0.36
CXCL1P09341 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CXCL1P09341 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CXCL1P09341 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CXCL1P09341 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.31■□□□□ 0.36
CXCL1P09341 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CXCL1P09341 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CXCL1P09341 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CXCL1P09341 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CXCL1P09341 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
CXCL1P09341 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CXCL1P09341 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC17.3■□□□□ 0.36
CXCL1P09341 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CXCL1P09341 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CXCL1P09341 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms