Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
SMIM28A0A1B0GU29 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
SMIM28A0A1B0GU29 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
SMIM28A0A1B0GU29 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC24.18■■□□□ 1.46
SMIM28A0A1B0GU29 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC24.18■■□□□ 1.46
SMIM28A0A1B0GU29 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
SMIM28A0A1B0GU29 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC24.18■■□□□ 1.46
SMIM28A0A1B0GU29 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
SMIM28A0A1B0GU29 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
SMIM28A0A1B0GU29 RASA4CP-201ENST00000424092 1398 ntBASIC24.17■■□□□ 1.46
SMIM28A0A1B0GU29 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
SMIM28A0A1B0GU29 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC24.17■■□□□ 1.46
SMIM28A0A1B0GU29 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
SMIM28A0A1B0GU29 AL499627.2-201ENST00000606283 725 ntBASIC24.17■■□□□ 1.46
SMIM28A0A1B0GU29 LINC01529-204ENST00000636474 1715 ntBASIC24.17■■□□□ 1.46
SMIM28A0A1B0GU29 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
SMIM28A0A1B0GU29 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
SMIM28A0A1B0GU29 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
SMIM28A0A1B0GU29 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
SMIM28A0A1B0GU29 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
SMIM28A0A1B0GU29 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
SMIM28A0A1B0GU29 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
SMIM28A0A1B0GU29 GUK1-205ENST00000366722 850 ntTSL 3 BASIC24.16■■□□□ 1.46
SMIM28A0A1B0GU29 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC24.16■■□□□ 1.46
SMIM28A0A1B0GU29 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC24.16■■□□□ 1.46
SMIM28A0A1B0GU29 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC24.16■■□□□ 1.46
SMIM28A0A1B0GU29 AC027682.1-201ENST00000562846 899 ntBASIC24.16■■□□□ 1.46
SMIM28A0A1B0GU29 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC24.16■■□□□ 1.46
SMIM28A0A1B0GU29 CA15P2-201ENST00000611168 834 ntBASIC24.16■■□□□ 1.46
SMIM28A0A1B0GU29 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
SMIM28A0A1B0GU29 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
SMIM28A0A1B0GU29 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC24.16■■□□□ 1.46
SMIM28A0A1B0GU29 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
SMIM28A0A1B0GU29 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC24.15■■□□□ 1.46
SMIM28A0A1B0GU29 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC24.15■■□□□ 1.46
SMIM28A0A1B0GU29 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC24.15■■□□□ 1.46
SMIM28A0A1B0GU29 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
SMIM28A0A1B0GU29 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
SMIM28A0A1B0GU29 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
SMIM28A0A1B0GU29 AC105265.2-201ENST00000467189 838 ntBASIC24.15■■□□□ 1.46
SMIM28A0A1B0GU29 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
SMIM28A0A1B0GU29 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
SMIM28A0A1B0GU29 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC24.15■■□□□ 1.46
SMIM28A0A1B0GU29 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC24.14■■□□□ 1.46
SMIM28A0A1B0GU29 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
SMIM28A0A1B0GU29 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC24.14■■□□□ 1.45
SMIM28A0A1B0GU29 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC24.14■■□□□ 1.45
SMIM28A0A1B0GU29 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
SMIM28A0A1B0GU29 AC099791.1-201ENST00000416440 715 ntBASIC24.14■■□□□ 1.45
SMIM28A0A1B0GU29 BX842568.3-201ENST00000418104 571 ntBASIC24.14■■□□□ 1.45
SMIM28A0A1B0GU29 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC24.14■■□□□ 1.45
SMIM28A0A1B0GU29 AC233992.3-201ENST00000607491 485 ntBASIC24.14■■□□□ 1.45
SMIM28A0A1B0GU29 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
SMIM28A0A1B0GU29 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC24.14■■□□□ 1.45
SMIM28A0A1B0GU29 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC24.14■■□□□ 1.45
SMIM28A0A1B0GU29 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC24.14■■□□□ 1.45
SMIM28A0A1B0GU29 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
SMIM28A0A1B0GU29 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC24.13■■□□□ 1.45
SMIM28A0A1B0GU29 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC24.13■■□□□ 1.45
SMIM28A0A1B0GU29 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
SMIM28A0A1B0GU29 SNX3-202ENST00000349379 890 ntTSL 2 BASIC24.13■■□□□ 1.45
SMIM28A0A1B0GU29 STOX2-205ENST00000513034 807 ntTSL 3 BASIC24.13■■□□□ 1.45
SMIM28A0A1B0GU29 AC133637.1-201ENST00000624115 1537 ntBASIC24.13■■□□□ 1.45
SMIM28A0A1B0GU29 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC24.13■■□□□ 1.45
SMIM28A0A1B0GU29 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC24.13■■□□□ 1.45
SMIM28A0A1B0GU29 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
SMIM28A0A1B0GU29 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
SMIM28A0A1B0GU29 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
SMIM28A0A1B0GU29 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC24.12■■□□□ 1.45
SMIM28A0A1B0GU29 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC24.12■■□□□ 1.45
SMIM28A0A1B0GU29 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC24.12■■□□□ 1.45
SMIM28A0A1B0GU29 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
SMIM28A0A1B0GU29 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC24.12■■□□□ 1.45
SMIM28A0A1B0GU29 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC24.12■■□□□ 1.45
SMIM28A0A1B0GU29 AC079630.1-202ENST00000618127 1840 ntBASIC24.12■■□□□ 1.45
SMIM28A0A1B0GU29 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
SMIM28A0A1B0GU29 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
SMIM28A0A1B0GU29 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC24.11■■□□□ 1.45
SMIM28A0A1B0GU29 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC24.11■■□□□ 1.45
SMIM28A0A1B0GU29 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
SMIM28A0A1B0GU29 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
SMIM28A0A1B0GU29 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC24.11■■□□□ 1.45
SMIM28A0A1B0GU29 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC24.11■■□□□ 1.45
SMIM28A0A1B0GU29 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC24.11■■□□□ 1.45
SMIM28A0A1B0GU29 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC24.11■■□□□ 1.45
SMIM28A0A1B0GU29 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
SMIM28A0A1B0GU29 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC24.11■■□□□ 1.45
SMIM28A0A1B0GU29 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
SMIM28A0A1B0GU29 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SMIM28A0A1B0GU29 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC24.1■■□□□ 1.45
SMIM28A0A1B0GU29 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
SMIM28A0A1B0GU29 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC24.1■■□□□ 1.45
SMIM28A0A1B0GU29 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC24.1■■□□□ 1.45
SMIM28A0A1B0GU29 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SMIM28A0A1B0GU29 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
SMIM28A0A1B0GU29 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
SMIM28A0A1B0GU29 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SMIM28A0A1B0GU29 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC24.1■■□□□ 1.45
SMIM28A0A1B0GU29 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC24.1■■□□□ 1.45
SMIM28A0A1B0GU29 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms