Protein–RNA interactions for Protein: A0A087WT01

TRAV27, T-cell receptor alpha variable 27 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV27A0A087WT01 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRAV27A0A087WT01 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRAV27A0A087WT01 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRAV27A0A087WT01 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
TRAV27A0A087WT01 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
TRAV27A0A087WT01 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.28■□□□□ 0.84
TRAV27A0A087WT01 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.28■□□□□ 0.84
TRAV27A0A087WT01 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.28■□□□□ 0.84
TRAV27A0A087WT01 AL031848.2-201ENST00000607670 837 ntBASIC20.28■□□□□ 0.84
TRAV27A0A087WT01 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.28■□□□□ 0.84
TRAV27A0A087WT01 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
TRAV27A0A087WT01 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
TRAV27A0A087WT01 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
TRAV27A0A087WT01 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TRAV27A0A087WT01 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
TRAV27A0A087WT01 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.27■□□□□ 0.84
TRAV27A0A087WT01 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.27■□□□□ 0.84
TRAV27A0A087WT01 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TRAV27A0A087WT01 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.27■□□□□ 0.84
TRAV27A0A087WT01 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.27■□□□□ 0.84
TRAV27A0A087WT01 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TRAV27A0A087WT01 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
TRAV27A0A087WT01 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.27■□□□□ 0.84
TRAV27A0A087WT01 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
TRAV27A0A087WT01 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.83
TRAV27A0A087WT01 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRAV27A0A087WT01 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
TRAV27A0A087WT01 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRAV27A0A087WT01 AL353803.4-201ENST00000565882 1934 ntBASIC20.26■□□□□ 0.83
TRAV27A0A087WT01 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRAV27A0A087WT01 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRAV27A0A087WT01 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.26■□□□□ 0.83
TRAV27A0A087WT01 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.26■□□□□ 0.83
TRAV27A0A087WT01 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.26■□□□□ 0.83
TRAV27A0A087WT01 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.26■□□□□ 0.83
TRAV27A0A087WT01 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRAV27A0A087WT01 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRAV27A0A087WT01 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.26■□□□□ 0.83
TRAV27A0A087WT01 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
TRAV27A0A087WT01 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
TRAV27A0A087WT01 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
TRAV27A0A087WT01 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
TRAV27A0A087WT01 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAV27A0A087WT01 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.25■□□□□ 0.83
TRAV27A0A087WT01 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.25■□□□□ 0.83
TRAV27A0A087WT01 AC137630.3-201ENST00000607245 391 ntBASIC20.25■□□□□ 0.83
TRAV27A0A087WT01 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.25■□□□□ 0.83
TRAV27A0A087WT01 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
TRAV27A0A087WT01 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.25■□□□□ 0.83
TRAV27A0A087WT01 GUSBP5-202ENST00000510805 1989 ntBASIC20.25■□□□□ 0.83
TRAV27A0A087WT01 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.24■□□□□ 0.83
TRAV27A0A087WT01 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRAV27A0A087WT01 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.24■□□□□ 0.83
TRAV27A0A087WT01 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRAV27A0A087WT01 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRAV27A0A087WT01 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.24■□□□□ 0.83
TRAV27A0A087WT01 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRAV27A0A087WT01 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
TRAV27A0A087WT01 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRAV27A0A087WT01 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
TRAV27A0A087WT01 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.23■□□□□ 0.83
TRAV27A0A087WT01 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV27A0A087WT01 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV27A0A087WT01 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV27A0A087WT01 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.23■□□□□ 0.83
TRAV27A0A087WT01 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV27A0A087WT01 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV27A0A087WT01 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
TRAV27A0A087WT01 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV27A0A087WT01 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV27A0A087WT01 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TRAV27A0A087WT01 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.23■□□□□ 0.83
TRAV27A0A087WT01 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRAV27A0A087WT01 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
TRAV27A0A087WT01 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.22■□□□□ 0.83
TRAV27A0A087WT01 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRAV27A0A087WT01 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
TRAV27A0A087WT01 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
TRAV27A0A087WT01 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRAV27A0A087WT01 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRAV27A0A087WT01 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRAV27A0A087WT01 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.22■□□□□ 0.83
TRAV27A0A087WT01 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.22■□□□□ 0.83
TRAV27A0A087WT01 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.22■□□□□ 0.83
TRAV27A0A087WT01 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.22■□□□□ 0.83
TRAV27A0A087WT01 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.22■□□□□ 0.83
TRAV27A0A087WT01 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRAV27A0A087WT01 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TRAV27A0A087WT01 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.22■□□□□ 0.83
TRAV27A0A087WT01 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TRAV27A0A087WT01 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
TRAV27A0A087WT01 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAV27A0A087WT01 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
TRAV27A0A087WT01 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAV27A0A087WT01 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAV27A0A087WT01 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
TRAV27A0A087WT01 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAV27A0A087WT01 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.21■□□□□ 0.83
TRAV27A0A087WT01 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRAV27A0A087WT01 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms