Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm2415-204ENSMUST00000190235 2004 ntBASIC28.64■■■□□ 2.17
Prpf40aQ9R1C7 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.17
Prpf40aQ9R1C7 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
Prpf40aQ9R1C7 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC28.57■■■□□ 2.16
Prpf40aQ9R1C7 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
Prpf40aQ9R1C7 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
Prpf40aQ9R1C7 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
Prpf40aQ9R1C7 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
Prpf40aQ9R1C7 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
Prpf40aQ9R1C7 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
Prpf40aQ9R1C7 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
Prpf40aQ9R1C7 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
Prpf40aQ9R1C7 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC28.44■■■□□ 2.14
Prpf40aQ9R1C7 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC28.42■■■□□ 2.14
Prpf40aQ9R1C7 Gm6658-202ENSMUST00000209493 1885 ntBASIC28.41■■■□□ 2.14
Prpf40aQ9R1C7 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
Prpf40aQ9R1C7 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Prpf40aQ9R1C7 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Prpf40aQ9R1C7 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC28.37■■■□□ 2.13
Prpf40aQ9R1C7 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
Prpf40aQ9R1C7 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC28.35■■■□□ 2.13
Prpf40aQ9R1C7 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
Prpf40aQ9R1C7 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Prpf40aQ9R1C7 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
Prpf40aQ9R1C7 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
Prpf40aQ9R1C7 Gm24804-201ENSMUST00000174982 85 ntBASIC28.27■■■□□ 2.12
Prpf40aQ9R1C7 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
Prpf40aQ9R1C7 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
Prpf40aQ9R1C7 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC28.24■■■□□ 2.11
Prpf40aQ9R1C7 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
Prpf40aQ9R1C7 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
Prpf40aQ9R1C7 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC28.23■■■□□ 2.11
Prpf40aQ9R1C7 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
Prpf40aQ9R1C7 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC28.21■■■□□ 2.11
Prpf40aQ9R1C7 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC28.2■■■□□ 2.1
Prpf40aQ9R1C7 AC153504.1-201ENSMUST00000218379 2290 ntBASIC28.19■■■□□ 2.1
Prpf40aQ9R1C7 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
Prpf40aQ9R1C7 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC28.18■■■□□ 2.1
Prpf40aQ9R1C7 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
Prpf40aQ9R1C7 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
Prpf40aQ9R1C7 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
Prpf40aQ9R1C7 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Prpf40aQ9R1C7 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC28.11■■■□□ 2.09
Prpf40aQ9R1C7 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
Prpf40aQ9R1C7 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Prpf40aQ9R1C7 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
Prpf40aQ9R1C7 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
Prpf40aQ9R1C7 Peli2-204ENSMUST00000226513 1320 ntBASIC28.07■■■□□ 2.08
Prpf40aQ9R1C7 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
Prpf40aQ9R1C7 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
Prpf40aQ9R1C7 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
Prpf40aQ9R1C7 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC28.05■■■□□ 2.08
Prpf40aQ9R1C7 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC28.04■■■□□ 2.08
Prpf40aQ9R1C7 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Prpf40aQ9R1C7 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
Prpf40aQ9R1C7 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC28.02■■■□□ 2.08
Prpf40aQ9R1C7 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
Prpf40aQ9R1C7 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC28.01■■■□□ 2.08
Prpf40aQ9R1C7 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC28.01■■■□□ 2.07
Prpf40aQ9R1C7 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
Prpf40aQ9R1C7 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC27.99■■■□□ 2.07
Prpf40aQ9R1C7 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
Prpf40aQ9R1C7 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC27.98■■■□□ 2.07
Prpf40aQ9R1C7 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
Prpf40aQ9R1C7 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC27.96■■■□□ 2.07
Prpf40aQ9R1C7 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC27.95■■■□□ 2.07
Prpf40aQ9R1C7 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
Prpf40aQ9R1C7 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC27.94■■■□□ 2.06
Prpf40aQ9R1C7 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC27.91■■■□□ 2.06
Prpf40aQ9R1C7 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
Prpf40aQ9R1C7 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC27.9■■■□□ 2.06
Prpf40aQ9R1C7 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
Prpf40aQ9R1C7 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC27.89■■■□□ 2.06
Prpf40aQ9R1C7 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC27.89■■■□□ 2.06
Prpf40aQ9R1C7 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
Prpf40aQ9R1C7 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC27.88■■■□□ 2.05
Prpf40aQ9R1C7 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
Prpf40aQ9R1C7 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
Prpf40aQ9R1C7 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC27.87■■■□□ 2.05
Prpf40aQ9R1C7 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
Prpf40aQ9R1C7 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC27.84■■■□□ 2.05
Prpf40aQ9R1C7 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC27.84■■■□□ 2.05
Prpf40aQ9R1C7 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
Prpf40aQ9R1C7 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
Prpf40aQ9R1C7 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC27.81■■■□□ 2.04
Prpf40aQ9R1C7 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
Prpf40aQ9R1C7 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
Prpf40aQ9R1C7 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
Prpf40aQ9R1C7 Gm16148-201ENSMUST00000119653 893 ntBASIC27.79■■■□□ 2.04
Prpf40aQ9R1C7 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC27.78■■■□□ 2.04
Prpf40aQ9R1C7 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
Prpf40aQ9R1C7 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC27.76■■■□□ 2.04
Prpf40aQ9R1C7 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
Prpf40aQ9R1C7 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC27.76■■■□□ 2.03
Prpf40aQ9R1C7 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC27.72■■■□□ 2.03
Prpf40aQ9R1C7 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
Prpf40aQ9R1C7 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
Prpf40aQ9R1C7 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC27.7■■■□□ 2.02
Prpf40aQ9R1C7 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
Prpf40aQ9R1C7 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC27.69■■■□□ 2.02
Retrieved 100 of 76,532 protein–RNA pairs in 14.1 ms