Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
Ccdc40Q8BI79 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
Ccdc40Q8BI79 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC26.93■■□□□ 1.9
Ccdc40Q8BI79 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC26.93■■□□□ 1.9
Ccdc40Q8BI79 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Ccdc40Q8BI79 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
Ccdc40Q8BI79 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
Ccdc40Q8BI79 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
Ccdc40Q8BI79 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
Ccdc40Q8BI79 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC26.87■■□□□ 1.89
Ccdc40Q8BI79 AC166822.3-201ENSMUST00000227394 661 ntBASIC26.85■■□□□ 1.89
Ccdc40Q8BI79 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC26.84■■□□□ 1.89
Ccdc40Q8BI79 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC26.84■■□□□ 1.89
Ccdc40Q8BI79 Gm26115-201ENSMUST00000175605 87 ntBASIC26.84■■□□□ 1.89
Ccdc40Q8BI79 Gm2415-204ENSMUST00000190235 2004 ntBASIC26.83■■□□□ 1.89
Ccdc40Q8BI79 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
Ccdc40Q8BI79 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC26.79■■□□□ 1.88
Ccdc40Q8BI79 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
Ccdc40Q8BI79 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC26.78■■□□□ 1.88
Ccdc40Q8BI79 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Ccdc40Q8BI79 Gm8109-201ENSMUST00000194076 746 ntBASIC26.74■■□□□ 1.87
Ccdc40Q8BI79 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Ccdc40Q8BI79 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC26.71■■□□□ 1.87
Ccdc40Q8BI79 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Ccdc40Q8BI79 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC26.7■■□□□ 1.87
Ccdc40Q8BI79 Gm6658-202ENSMUST00000209493 1885 ntBASIC26.68■■□□□ 1.86
Ccdc40Q8BI79 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC26.68■■□□□ 1.86
Ccdc40Q8BI79 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Ccdc40Q8BI79 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
Ccdc40Q8BI79 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC26.62■■□□□ 1.85
Ccdc40Q8BI79 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Ccdc40Q8BI79 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Ccdc40Q8BI79 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Ccdc40Q8BI79 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
Ccdc40Q8BI79 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
Ccdc40Q8BI79 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Ccdc40Q8BI79 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Ccdc40Q8BI79 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC26.55■■□□□ 1.84
Ccdc40Q8BI79 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Ccdc40Q8BI79 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Ccdc40Q8BI79 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Ccdc40Q8BI79 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
Ccdc40Q8BI79 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
Ccdc40Q8BI79 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC26.5■■□□□ 1.83
Ccdc40Q8BI79 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC26.49■■□□□ 1.83
Ccdc40Q8BI79 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Ccdc40Q8BI79 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Ccdc40Q8BI79 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC26.44■■□□□ 1.82
Ccdc40Q8BI79 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Ccdc40Q8BI79 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Ccdc40Q8BI79 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Ccdc40Q8BI79 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
Ccdc40Q8BI79 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Ccdc40Q8BI79 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Ccdc40Q8BI79 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Ccdc40Q8BI79 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Ccdc40Q8BI79 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Ccdc40Q8BI79 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC26.36■■□□□ 1.81
Ccdc40Q8BI79 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC26.35■■□□□ 1.81
Ccdc40Q8BI79 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Ccdc40Q8BI79 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Ccdc40Q8BI79 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC26.33■■□□□ 1.81
Ccdc40Q8BI79 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Ccdc40Q8BI79 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Ccdc40Q8BI79 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Ccdc40Q8BI79 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Ccdc40Q8BI79 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Ccdc40Q8BI79 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Ccdc40Q8BI79 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Ccdc40Q8BI79 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Ccdc40Q8BI79 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
Ccdc40Q8BI79 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ccdc40Q8BI79 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Ccdc40Q8BI79 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Ccdc40Q8BI79 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
Ccdc40Q8BI79 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC26.23■■□□□ 1.79
Ccdc40Q8BI79 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Ccdc40Q8BI79 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
Ccdc40Q8BI79 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Ccdc40Q8BI79 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
Ccdc40Q8BI79 Peli2-204ENSMUST00000226513 1320 ntBASIC26.19■■□□□ 1.78
Ccdc40Q8BI79 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Ccdc40Q8BI79 AC153504.1-201ENSMUST00000218379 2290 ntBASIC26.19■■□□□ 1.78
Ccdc40Q8BI79 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Ccdc40Q8BI79 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC26.18■■□□□ 1.78
Ccdc40Q8BI79 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
Ccdc40Q8BI79 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Ccdc40Q8BI79 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Ccdc40Q8BI79 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Ccdc40Q8BI79 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
Ccdc40Q8BI79 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC26.13■■□□□ 1.77
Ccdc40Q8BI79 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC26.12■■□□□ 1.77
Ccdc40Q8BI79 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC26.12■■□□□ 1.77
Ccdc40Q8BI79 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC26.11■■□□□ 1.77
Ccdc40Q8BI79 Gm24804-201ENSMUST00000174982 85 ntBASIC26.11■■□□□ 1.77
Ccdc40Q8BI79 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
Ccdc40Q8BI79 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Ccdc40Q8BI79 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Ccdc40Q8BI79 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC26.07■■□□□ 1.76
Ccdc40Q8BI79 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
Retrieved 100 of 76,532 protein–RNA pairs in 298.7 ms