Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC26,95■■□□□ 1,9
Ccdc40Q8BI79 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC26,94■■□□□ 1,9
Ccdc40Q8BI79 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC26,93■■□□□ 1,9
Ccdc40Q8BI79 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC26,93■■□□□ 1,9
Ccdc40Q8BI79 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC26,92■■□□□ 1,9
Ccdc40Q8BI79 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC26,91■■□□□ 1,9
Ccdc40Q8BI79 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC26,9■■□□□ 1,9
Ccdc40Q8BI79 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC26,9■■□□□ 1,9
Ccdc40Q8BI79 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC26,9■■□□□ 1,9
Ccdc40Q8BI79 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC26,87■■□□□ 1,89
Ccdc40Q8BI79 AC166822.3-201ENSMUST00000227394 661 ntBASIC26,85■■□□□ 1,89
Ccdc40Q8BI79 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC26,84■■□□□ 1,89
Ccdc40Q8BI79 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC26,84■■□□□ 1,89
Ccdc40Q8BI79 Gm26115-201ENSMUST00000175605 87 ntBASIC26,84■■□□□ 1,89
Ccdc40Q8BI79 Gm2415-204ENSMUST00000190235 2004 ntBASIC26,83■■□□□ 1,89
Ccdc40Q8BI79 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC26,8■■□□□ 1,88
Ccdc40Q8BI79 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC26,79■■□□□ 1,88
Ccdc40Q8BI79 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC26,79■■□□□ 1,88
Ccdc40Q8BI79 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC26,78■■□□□ 1,88
Ccdc40Q8BI79 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC26,75■■□□□ 1,87
Ccdc40Q8BI79 Gm8109-201ENSMUST00000194076 746 ntBASIC26,74■■□□□ 1,87
Ccdc40Q8BI79 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC26,72■■□□□ 1,87
Ccdc40Q8BI79 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC26,71■■□□□ 1,87
Ccdc40Q8BI79 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC26,71■■□□□ 1,87
Ccdc40Q8BI79 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC26,7■■□□□ 1,87
Ccdc40Q8BI79 Gm6658-202ENSMUST00000209493 1885 ntBASIC26,68■■□□□ 1,86
Ccdc40Q8BI79 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC26,68■■□□□ 1,86
Ccdc40Q8BI79 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC26,67■■□□□ 1,86
Ccdc40Q8BI79 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC26,65■■□□□ 1,86
Ccdc40Q8BI79 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC26,62■■□□□ 1,85
Ccdc40Q8BI79 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC26,61■■□□□ 1,85
Ccdc40Q8BI79 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC26,61■■□□□ 1,85
Ccdc40Q8BI79 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC26,6■■□□□ 1,85
Ccdc40Q8BI79 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC26,59■■□□□ 1,85
Ccdc40Q8BI79 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC26,59■■□□□ 1,85
Ccdc40Q8BI79 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC26,58■■□□□ 1,85
Ccdc40Q8BI79 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC26,57■■□□□ 1,84
Ccdc40Q8BI79 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC26,55■■□□□ 1,84
Ccdc40Q8BI79 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC26,55■■□□□ 1,84
Ccdc40Q8BI79 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC26,54■■□□□ 1,84
Ccdc40Q8BI79 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC26,53■■□□□ 1,84
Ccdc40Q8BI79 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC26,52■■□□□ 1,84
Ccdc40Q8BI79 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC26,52■■□□□ 1,84
Ccdc40Q8BI79 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC26,5■■□□□ 1,83
Ccdc40Q8BI79 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC26,49■■□□□ 1,83
Ccdc40Q8BI79 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC26,48■■□□□ 1,83
Ccdc40Q8BI79 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC26,46■■□□□ 1,83
Ccdc40Q8BI79 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC26,44■■□□□ 1,82
Ccdc40Q8BI79 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC26,43■■□□□ 1,82
Ccdc40Q8BI79 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC26,43■■□□□ 1,82
Ccdc40Q8BI79 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC26,42■■□□□ 1,82
Ccdc40Q8BI79 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC26,4■■□□□ 1,82
Ccdc40Q8BI79 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC26,38■■□□□ 1,81
Ccdc40Q8BI79 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC26,38■■□□□ 1,81
Ccdc40Q8BI79 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC26,37■■□□□ 1,81
Ccdc40Q8BI79 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC26,37■■□□□ 1,81
Ccdc40Q8BI79 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC26,36■■□□□ 1,81
Ccdc40Q8BI79 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC26,36■■□□□ 1,81
Ccdc40Q8BI79 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC26,35■■□□□ 1,81
Ccdc40Q8BI79 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC26,33■■□□□ 1,81
Ccdc40Q8BI79 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC26,33■■□□□ 1,81
Ccdc40Q8BI79 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC26,33■■□□□ 1,81
Ccdc40Q8BI79 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC26,32■■□□□ 1,8
Ccdc40Q8BI79 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC26,31■■□□□ 1,8
Ccdc40Q8BI79 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC26,31■■□□□ 1,8
Ccdc40Q8BI79 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC26,3■■□□□ 1,8
Ccdc40Q8BI79 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC26,3■■□□□ 1,8
Ccdc40Q8BI79 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC26,29■■□□□ 1,8
Ccdc40Q8BI79 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC26,29■■□□□ 1,8
Ccdc40Q8BI79 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC26,28■■□□□ 1,8
Ccdc40Q8BI79 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC26,27■■□□□ 1,8
Ccdc40Q8BI79 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC26,27■■□□□ 1,8
Ccdc40Q8BI79 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC26,25■■□□□ 1,79
Ccdc40Q8BI79 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC26,25■■□□□ 1,79
Ccdc40Q8BI79 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC26,24■■□□□ 1,79
Ccdc40Q8BI79 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC26,23■■□□□ 1,79
Ccdc40Q8BI79 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC26,22■■□□□ 1,79
Ccdc40Q8BI79 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC26,22■■□□□ 1,79
Ccdc40Q8BI79 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC26,21■■□□□ 1,79
Ccdc40Q8BI79 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC26,2■■□□□ 1,78
Ccdc40Q8BI79 Peli2-204ENSMUST00000226513 1320 ntBASIC26,19■■□□□ 1,78
Ccdc40Q8BI79 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC26,19■■□□□ 1,78
Ccdc40Q8BI79 AC153504.1-201ENSMUST00000218379 2290 ntBASIC26,19■■□□□ 1,78
Ccdc40Q8BI79 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC26,18■■□□□ 1,78
Ccdc40Q8BI79 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC26,18■■□□□ 1,78
Ccdc40Q8BI79 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC26,16■■□□□ 1,78
Ccdc40Q8BI79 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC26,16■■□□□ 1,78
Ccdc40Q8BI79 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC26,15■■□□□ 1,78
Ccdc40Q8BI79 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC26,15■■□□□ 1,78
Ccdc40Q8BI79 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC26,14■■□□□ 1,78
Ccdc40Q8BI79 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC26,13■■□□□ 1,77
Ccdc40Q8BI79 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC26,12■■□□□ 1,77
Ccdc40Q8BI79 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC26,12■■□□□ 1,77
Ccdc40Q8BI79 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC26,11■■□□□ 1,77
Ccdc40Q8BI79 Gm24804-201ENSMUST00000174982 85 ntBASIC26,11■■□□□ 1,77
Ccdc40Q8BI79 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC26,1■■□□□ 1,77
Ccdc40Q8BI79 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC26,1■■□□□ 1,77
Ccdc40Q8BI79 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC26,08■■□□□ 1,77
Ccdc40Q8BI79 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC26,07■■□□□ 1,76
Ccdc40Q8BI79 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC26,07■■□□□ 1,76
Retrieved 100 of 76,532 protein–RNA pairs in 11,1 ms