Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
MRE11P49959 GZMB-202ENST00000382540 816 ntTSL 5 BASIC16.41■□□□□ 0.22
MRE11P49959 LINC01756-201ENST00000417651 2148 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
MRE11P49959 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC16.41■□□□□ 0.22
MRE11P49959 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC16.41■□□□□ 0.22
MRE11P49959 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
MRE11P49959 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC16.41■□□□□ 0.22
MRE11P49959 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC16.41■□□□□ 0.22
MRE11P49959 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC16.41■□□□□ 0.22
MRE11P49959 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
MRE11P49959 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC16.41■□□□□ 0.22
MRE11P49959 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC16.41■□□□□ 0.22
MRE11P49959 ARFIP2-210ENST00000614314 3846 ntTSL 2 BASIC16.41■□□□□ 0.22
MRE11P49959 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC16.41■□□□□ 0.22
MRE11P49959 AP001002.3-201ENST00000623482 206 ntBASIC16.41■□□□□ 0.22
MRE11P49959 POMT1-203ENST00000372228 3123 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
MRE11P49959 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MRE11P49959 COG5-201ENST00000297135 4060 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
MRE11P49959 ARAF-203ENST00000377045 2458 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
MRE11P49959 VENTX-201ENST00000325980 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MRE11P49959 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
MRE11P49959 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MRE11P49959 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC16.41■□□□□ 0.22
MRE11P49959 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
MRE11P49959 FAM214B-205ENST00000488109 2999 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
MRE11P49959 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
MRE11P49959 NLGN3-206ENST00000612180 3319 ntTSL 5 BASIC16.4■□□□□ 0.22
MRE11P49959 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
MRE11P49959 CDC20B-202ENST00000322374 1679 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MRE11P49959 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MRE11P49959 PLA1A-206ENST00000495992 1695 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MRE11P49959 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MRE11P49959 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC16.4■□□□□ 0.22
MRE11P49959 PCMTD1-208ENST00000544451 3697 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MRE11P49959 S1PR1-201ENST00000305352 2909 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MRE11P49959 LINC01024-201ENST00000499203 2769 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MRE11P49959 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MRE11P49959 ELMOD3-206ENST00000409890 2492 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
MRE11P49959 DMTF1-202ENST00000394703 4038 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MRE11P49959 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC16.4■□□□□ 0.22
MRE11P49959 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
MRE11P49959 COPS7B-201ENST00000350033 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MRE11P49959 SYNJ2-208ENST00000640338 3959 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
MRE11P49959 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MRE11P49959 AC091046.1-201ENST00000331871 207 ntBASIC16.4■□□□□ 0.22
MRE11P49959 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC16.4■□□□□ 0.22
MRE11P49959 AC026434.2-201ENST00000506094 1078 ntBASIC16.4■□□□□ 0.22
MRE11P49959 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC16.4■□□□□ 0.22
MRE11P49959 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC16.4■□□□□ 0.22
MRE11P49959 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC16.4■□□□□ 0.22
MRE11P49959 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC16.4■□□□□ 0.22
MRE11P49959 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC16.4■□□□□ 0.22
MRE11P49959 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC16.4■□□□□ 0.22
MRE11P49959 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.4■□□□□ 0.22
MRE11P49959 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
MRE11P49959 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MRE11P49959 SLC5A11-203ENST00000449109 2069 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MRE11P49959 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC16.4■□□□□ 0.22
MRE11P49959 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MRE11P49959 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MRE11P49959 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MRE11P49959 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC16.4■□□□□ 0.22
MRE11P49959 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MRE11P49959 IP6K3-201ENST00000293756 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MRE11P49959 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
MRE11P49959 TRAPPC9-201ENST00000389328 4474 ntTSL 2 BASIC16.4■□□□□ 0.22
MRE11P49959 DQX1-202ENST00000404568 2689 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
MRE11P49959 NR1H3-201ENST00000395397 1501 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
MRE11P49959 AC009123.1-202ENST00000565643 2551 ntTSL 2 BASIC16.39■□□□□ 0.22
MRE11P49959 IL12RB1-207ENST00000600835 2901 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MRE11P49959 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MRE11P49959 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC16.39■□□□□ 0.21
MRE11P49959 APLP2-202ENST00000278756 3687 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
MRE11P49959 ZNF573-204ENST00000392138 2266 ntTSL 2 BASIC16.39■□□□□ 0.21
MRE11P49959 NFKB1-202ENST00000394820 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
MRE11P49959 PCDHGB3-201ENST00000576222 4727 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MRE11P49959 AMT-239ENST00000636865 1914 ntTSL 5 BASIC16.39■□□□□ 0.21
MRE11P49959 MPHOSPH10-201ENST00000244230 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MRE11P49959 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MRE11P49959 TMEM164-203ENST00000372072 4975 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
MRE11P49959 ZNF571-AS1-203ENST00000586139 2684 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MRE11P49959 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MRE11P49959 TOX2-203ENST00000372999 2519 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
MRE11P49959 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
MRE11P49959 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
MRE11P49959 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
MRE11P49959 SERF2-206ENST00000409291 807 ntTSL 3 BASIC16.39■□□□□ 0.21
MRE11P49959 SERF2-209ENST00000409646 559 ntTSL 4 BASIC16.39■□□□□ 0.21
MRE11P49959 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC16.39■□□□□ 0.21
MRE11P49959 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC16.39■□□□□ 0.21
MRE11P49959 ADM-202ENST00000524948 584 ntTSL 2 BASIC16.39■□□□□ 0.21
MRE11P49959 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC16.39■□□□□ 0.21
MRE11P49959 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
MRE11P49959 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC16.39■□□□□ 0.21
MRE11P49959 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC16.39■□□□□ 0.21
MRE11P49959 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC16.39■□□□□ 0.21
MRE11P49959 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
MRE11P49959 CR392039.2-201ENST00000623182 509 ntBASIC16.39■□□□□ 0.21
MRE11P49959 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC16.39■□□□□ 0.21
MRE11P49959 CRY2-212ENST00000616623 4204 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms