Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 CCDC178-201ENST00000300227 3087 ntAPPRIS P3 TSL 2 BASIC14.27□□□□□ -0.13
HMGA1P17096 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
HMGA1P17096 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
HMGA1P17096 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
HMGA1P17096 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
HMGA1P17096 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HMGA1P17096 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC14.26□□□□□ -0.13
HMGA1P17096 DDC-212ENST00000615193 1674 ntTSL 3 BASIC14.26□□□□□ -0.13
HMGA1P17096 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HMGA1P17096 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
HMGA1P17096 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HMGA1P17096 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC14.26□□□□□ -0.13
HMGA1P17096 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HMGA1P17096 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HMGA1P17096 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
HMGA1P17096 PSMC3IP-201ENST00000253789 1408 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HMGA1P17096 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC14.26□□□□□ -0.13
HMGA1P17096 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC14.26□□□□□ -0.13
HMGA1P17096 FSTL4-207ENST00000621681 2660 ntTSL 5 BASIC14.26□□□□□ -0.13
HMGA1P17096 TAGLN3-205ENST00000478951 1301 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HMGA1P17096 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC14.26□□□□□ -0.13
HMGA1P17096 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HMGA1P17096 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
HMGA1P17096 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC14.26□□□□□ -0.13
HMGA1P17096 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HMGA1P17096 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC14.26□□□□□ -0.13
HMGA1P17096 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC14.26□□□□□ -0.13
HMGA1P17096 AC104961.1-201ENST00000427605 771 ntBASIC14.26□□□□□ -0.13
HMGA1P17096 IDS-203ENST00000428056 1213 ntTSL 2 BASIC14.26□□□□□ -0.13
HMGA1P17096 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC14.26□□□□□ -0.13
HMGA1P17096 AL662797.1-201ENST00000442852 799 ntTSL 3 BASIC14.26□□□□□ -0.13
HMGA1P17096 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC14.26□□□□□ -0.13
HMGA1P17096 AC005009.2-201ENST00000452471 687 ntTSL 3 BASIC14.26□□□□□ -0.13
HMGA1P17096 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC14.26□□□□□ -0.13
HMGA1P17096 VDAC1P11-201ENST00000458323 852 ntBASIC14.26□□□□□ -0.13
HMGA1P17096 CISD2-202ENST00000503643 808 ntTSL 2 BASIC14.26□□□□□ -0.13
HMGA1P17096 AC078814.4-201ENST00000546650 327 ntBASIC14.26□□□□□ -0.13
HMGA1P17096 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC14.26□□□□□ -0.13
HMGA1P17096 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HMGA1P17096 APOC1-209ENST00000592885 562 ntTSL 3 BASIC14.26□□□□□ -0.13
HMGA1P17096 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC14.26□□□□□ -0.13
HMGA1P17096 AC139713.2-207ENST00000641556 1292 ntBASIC14.26□□□□□ -0.13
HMGA1P17096 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HMGA1P17096 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
HMGA1P17096 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC14.26□□□□□ -0.13
HMGA1P17096 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HMGA1P17096 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
HMGA1P17096 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HMGA1P17096 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HMGA1P17096 AC139795.2-201ENST00000499900 1751 ntTSL 2 BASIC14.26□□□□□ -0.13
HMGA1P17096 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HMGA1P17096 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HMGA1P17096 CR383656.2-201ENST00000548656 2254 ntBASIC14.26□□□□□ -0.13
HMGA1P17096 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HMGA1P17096 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HMGA1P17096 AC023794.5-201ENST00000564380 2157 ntBASIC14.26□□□□□ -0.13
HMGA1P17096 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HMGA1P17096 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
HMGA1P17096 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
HMGA1P17096 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
HMGA1P17096 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HMGA1P17096 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC14.25□□□□□ -0.13
HMGA1P17096 CLUL1-202ENST00000400606 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGA1P17096 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGA1P17096 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC14.25□□□□□ -0.13
HMGA1P17096 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGA1P17096 APOL5-201ENST00000249044 1438 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGA1P17096 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC14.25□□□□□ -0.13
HMGA1P17096 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC14.25□□□□□ -0.13
HMGA1P17096 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGA1P17096 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGA1P17096 RIN2-202ENST00000440354 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGA1P17096 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HMGA1P17096 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HMGA1P17096 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGA1P17096 FAHD2B-201ENST00000272610 1305 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGA1P17096 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGA1P17096 MARK2P9-201ENST00000430958 1727 ntBASIC14.25□□□□□ -0.13
HMGA1P17096 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HMGA1P17096 CHEK2-203ENST00000382565 696 ntTSL 5 BASIC14.25□□□□□ -0.13
HMGA1P17096 HLA-DMA-202ENST00000395303 1007 ntBASIC14.25□□□□□ -0.13
HMGA1P17096 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC14.25□□□□□ -0.13
HMGA1P17096 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC14.25□□□□□ -0.13
HMGA1P17096 RPSAP12-201ENST00000435879 888 ntBASIC14.25□□□□□ -0.13
HMGA1P17096 ZNF877P-201ENST00000437614 612 ntBASIC14.25□□□□□ -0.13
HMGA1P17096 AL451000.1-201ENST00000451300 1186 ntBASIC14.25□□□□□ -0.13
HMGA1P17096 PPOX-204ENST00000462866 473 ntTSL 5 BASIC14.25□□□□□ -0.13
HMGA1P17096 RPL29P2-202ENST00000498671 657 ntBASIC14.25□□□□□ -0.13
HMGA1P17096 SEPHS2P1-201ENST00000511618 1162 ntBASIC14.25□□□□□ -0.13
HMGA1P17096 AC103736.1-201ENST00000524410 605 ntTSL 3 BASIC14.25□□□□□ -0.13
HMGA1P17096 PIGCP1-201ENST00000527583 895 ntBASIC14.25□□□□□ -0.13
HMGA1P17096 NAA38-204ENST00000575208 529 ntTSL 3 BASIC14.25□□□□□ -0.13
HMGA1P17096 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC14.25□□□□□ -0.13
HMGA1P17096 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC14.25□□□□□ -0.13
HMGA1P17096 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC14.25□□□□□ -0.13
HMGA1P17096 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC14.25□□□□□ -0.13
HMGA1P17096 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGA1P17096 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HMGA1P17096 LINC00638-201ENST00000555578 2518 ntBASIC14.25□□□□□ -0.13
HMGA1P17096 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms