Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB1P09429 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB1P09429 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC16.47■□□□□ 0.23
HMGB1P09429 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB1P09429 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB1P09429 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC16.47■□□□□ 0.23
HMGB1P09429 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
HMGB1P09429 GARS-210ENST00000627489 324 ntTSL 4 BASIC16.47■□□□□ 0.23
HMGB1P09429 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC16.47■□□□□ 0.23
HMGB1P09429 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC16.47■□□□□ 0.23
HMGB1P09429 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB1P09429 PGM1-202ENST00000371084 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB1P09429 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB1P09429 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB1P09429 AC144450.1-201ENST00000366424 1641 ntTSL 2 BASIC16.47■□□□□ 0.23
HMGB1P09429 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC16.47■□□□□ 0.23
HMGB1P09429 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB1P09429 MKRN5P-201ENST00000445263 1467 ntBASIC16.47■□□□□ 0.23
HMGB1P09429 TMEM78-201ENST00000323223 2175 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
HMGB1P09429 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
HMGB1P09429 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB1P09429 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB1P09429 AC073862.5-201ENST00000624129 2027 ntBASIC16.46■□□□□ 0.23
HMGB1P09429 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB1P09429 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGB1P09429 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGB1P09429 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB1P09429 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGB1P09429 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
HMGB1P09429 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB1P09429 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.23
HMGB1P09429 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB1P09429 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB1P09429 SAT1-201ENST00000379251 801 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGB1P09429 SAT1-202ENST00000379253 909 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGB1P09429 SAT1-203ENST00000379254 868 ntTSL 3 BASIC16.46■□□□□ 0.23
HMGB1P09429 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB1P09429 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB1P09429 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC16.46■□□□□ 0.23
HMGB1P09429 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC16.46■□□□□ 0.23
HMGB1P09429 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB1P09429 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC16.46■□□□□ 0.23
HMGB1P09429 RPL18AP8-201ENST00000486071 528 ntBASIC16.46■□□□□ 0.23
HMGB1P09429 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGB1P09429 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC16.46■□□□□ 0.23
HMGB1P09429 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC16.46■□□□□ 0.23
HMGB1P09429 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGB1P09429 AC145285.5-201ENST00000562217 361 ntBASIC16.46■□□□□ 0.23
HMGB1P09429 MIR3619-201ENST00000579667 83 ntBASIC16.46■□□□□ 0.23
HMGB1P09429 AC020922.3-201ENST00000595064 547 ntBASIC16.46■□□□□ 0.23
HMGB1P09429 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGB1P09429 AP001505.2-201ENST00000616815 443 ntBASIC16.46■□□□□ 0.23
HMGB1P09429 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
HMGB1P09429 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC16.46■□□□□ 0.23
HMGB1P09429 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
HMGB1P09429 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB1P09429 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB1P09429 FCHSD1-209ENST00000522783 2477 ntTSL 5 BASIC16.46■□□□□ 0.23
HMGB1P09429 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
HMGB1P09429 LINC00969-231ENST00000597482 1476 ntTSL 5 BASIC16.46■□□□□ 0.23
HMGB1P09429 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGB1P09429 AC005014.1-201ENST00000432006 2976 ntBASIC16.46■□□□□ 0.23
HMGB1P09429 ADAMTS7P1-201ENST00000613213 4793 ntBASIC16.46■□□□□ 0.22
HMGB1P09429 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.22
HMGB1P09429 PCDHA5-203ENST00000614258 4248 ntBASIC16.46■□□□□ 0.22
HMGB1P09429 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB1P09429 TEKT4P2-202ENST00000559466 1312 ntBASIC16.45■□□□□ 0.22
HMGB1P09429 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB1P09429 SLC14A1-205ENST00000502059 2371 ntTSL 2 BASIC16.45■□□□□ 0.22
HMGB1P09429 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB1P09429 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB1P09429 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC16.45■□□□□ 0.22
HMGB1P09429 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC16.45■□□□□ 0.22
HMGB1P09429 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC16.45■□□□□ 0.22
HMGB1P09429 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC16.45■□□□□ 0.22
HMGB1P09429 LINC01114-202ENST00000424321 2112 ntTSL 2 BASIC16.45■□□□□ 0.22
HMGB1P09429 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB1P09429 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB1P09429 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB1P09429 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB1P09429 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB1P09429 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB1P09429 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB1P09429 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB1P09429 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB1P09429 PPP1R26P4-201ENST00000619065 3527 ntBASIC16.45■□□□□ 0.22
HMGB1P09429 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB1P09429 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC16.45■□□□□ 0.22
HMGB1P09429 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB1P09429 MIR557-201ENST00000385239 98 ntBASIC16.45■□□□□ 0.22
HMGB1P09429 NME4-203ENST00000397722 1232 ntTSL 2 BASIC16.45■□□□□ 0.22
HMGB1P09429 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC16.45■□□□□ 0.22
HMGB1P09429 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC16.45■□□□□ 0.22
HMGB1P09429 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC16.45■□□□□ 0.22
HMGB1P09429 AC005077.2-201ENST00000449786 690 ntBASIC16.45■□□□□ 0.22
HMGB1P09429 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HMGB1P09429 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC16.45■□□□□ 0.22
HMGB1P09429 ADM-202ENST00000524948 584 ntTSL 2 BASIC16.45■□□□□ 0.22
HMGB1P09429 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC16.45■□□□□ 0.22
HMGB1P09429 AC242376.1-201ENST00000559033 726 ntBASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms