Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DOAP06340 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DOAP06340 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DOAP06340 TP73-201ENST00000346387 4854 ntTSL 5 BASIC16.34■□□□□ 0.21
HLA-DOAP06340 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC16.34■□□□□ 0.21
HLA-DOAP06340 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DOAP06340 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
HLA-DOAP06340 IL18BP-206ENST00000393707 1037 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DOAP06340 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DOAP06340 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC16.34■□□□□ 0.21
HLA-DOAP06340 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC16.34■□□□□ 0.21
HLA-DOAP06340 AC041040.1-201ENST00000425197 460 ntBASIC16.34■□□□□ 0.21
HLA-DOAP06340 AL512599.1-201ENST00000430724 685 ntBASIC16.34■□□□□ 0.21
HLA-DOAP06340 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC16.34■□□□□ 0.21
HLA-DOAP06340 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DOAP06340 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC16.34■□□□□ 0.21
HLA-DOAP06340 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
HLA-DOAP06340 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC16.34■□□□□ 0.21
HLA-DOAP06340 FAM86B3P-203ENST00000523992 854 ntBASIC16.34■□□□□ 0.21
HLA-DOAP06340 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC16.34■□□□□ 0.21
HLA-DOAP06340 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC16.34■□□□□ 0.21
HLA-DOAP06340 AL022344.2-201ENST00000568976 968 ntBASIC16.34■□□□□ 0.21
HLA-DOAP06340 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC16.34■□□□□ 0.21
HLA-DOAP06340 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC16.34■□□□□ 0.21
HLA-DOAP06340 AL160191.2-201ENST00000603975 601 ntBASIC16.34■□□□□ 0.21
HLA-DOAP06340 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC16.34■□□□□ 0.21
HLA-DOAP06340 HMGB1P24-201ENST00000611897 328 ntBASIC16.34■□□□□ 0.21
HLA-DOAP06340 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC16.34■□□□□ 0.21
HLA-DOAP06340 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC16.34■□□□□ 0.21
HLA-DOAP06340 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DOAP06340 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DOAP06340 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
HLA-DOAP06340 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DOAP06340 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DOAP06340 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DOAP06340 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
HLA-DOAP06340 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC16.34■□□□□ 0.21
HLA-DOAP06340 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DOAP06340 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC16.34■□□□□ 0.21
HLA-DOAP06340 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
HLA-DOAP06340 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
HLA-DOAP06340 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
HLA-DOAP06340 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
HLA-DOAP06340 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
HLA-DOAP06340 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
HLA-DOAP06340 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.21
HLA-DOAP06340 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
HLA-DOAP06340 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
HLA-DOAP06340 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
HLA-DOAP06340 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HLA-DOAP06340 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC16.33■□□□□ 0.2
HLA-DOAP06340 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC16.33■□□□□ 0.2
HLA-DOAP06340 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HLA-DOAP06340 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC16.33■□□□□ 0.2
HLA-DOAP06340 SURF4-203ENST00000371991 715 ntTSL 3 BASIC16.33■□□□□ 0.2
HLA-DOAP06340 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HLA-DOAP06340 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
HLA-DOAP06340 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
HLA-DOAP06340 KRT17P4-201ENST00000429445 819 ntBASIC16.33■□□□□ 0.2
HLA-DOAP06340 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HLA-DOAP06340 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC16.33■□□□□ 0.2
HLA-DOAP06340 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
HLA-DOAP06340 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC16.33■□□□□ 0.2
HLA-DOAP06340 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
HLA-DOAP06340 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC16.33■□□□□ 0.2
HLA-DOAP06340 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HLA-DOAP06340 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC16.33■□□□□ 0.2
HLA-DOAP06340 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
HLA-DOAP06340 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HLA-DOAP06340 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
HLA-DOAP06340 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
HLA-DOAP06340 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
HLA-DOAP06340 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HLA-DOAP06340 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HLA-DOAP06340 MST1P2-201ENST00000457982 2291 ntBASIC16.33■□□□□ 0.2
HLA-DOAP06340 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HLA-DOAP06340 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.33■□□□□ 0.2
HLA-DOAP06340 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HLA-DOAP06340 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HLA-DOAP06340 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HLA-DOAP06340 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HLA-DOAP06340 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
HLA-DOAP06340 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HLA-DOAP06340 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HLA-DOAP06340 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HLA-DOAP06340 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
HLA-DOAP06340 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC16.32■□□□□ 0.2
HLA-DOAP06340 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HLA-DOAP06340 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC16.32■□□□□ 0.2
HLA-DOAP06340 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC16.32■□□□□ 0.2
HLA-DOAP06340 AP001596.1-201ENST00000429340 781 ntTSL 5 BASIC16.32■□□□□ 0.2
HLA-DOAP06340 AL139008.1-201ENST00000437894 228 ntBASIC16.32■□□□□ 0.2
HLA-DOAP06340 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HLA-DOAP06340 VENTXP4-201ENST00000449029 958 ntBASIC16.32■□□□□ 0.2
HLA-DOAP06340 AC063952.3-201ENST00000467756 308 ntBASIC16.32■□□□□ 0.2
HLA-DOAP06340 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HLA-DOAP06340 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC16.32■□□□□ 0.2
HLA-DOAP06340 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
HLA-DOAP06340 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
HLA-DOAP06340 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms