Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 ALPK3-201ENST00000258888 10917 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 ADAM12-202ENST00000368679 7938 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 AC117489.1-201ENST00000625169 3217 ntBASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 PCDHA5-203ENST00000614258 4248 ntBASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 MIR1227-201ENST00000408484 88 ntBASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 LINC00265-2P-201ENST00000413372 782 ntBASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 GCSHP3-201ENST00000431120 391 ntBASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 RN7SL788P-201ENST00000460504 316 ntBASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 AC024293.1-201ENST00000467930 498 ntBASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 LINC01230-201ENST00000625222 3017 ntBASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 AL009178.2-201ENST00000597278 2719 ntBASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC3Q9BQI4 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 AC152010.1-201ENST00000415779 2006 ntBASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 MAP4K2-201ENST00000294066 7178 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 TRAK1-201ENST00000327628 5293 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 UCKL1-AS1-201ENST00000623569 3602 ntBASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 MYO16-205ENST00000457511 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 RNVU1-8-201ENST00000364272 125 ntBASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 ACTG1P19-201ENST00000418987 1116 ntBASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 GRAMD1A-203ENST00000424536 808 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 GNG10P1-201ENST00000452289 199 ntBASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 RN7SL396P-201ENST00000471086 295 ntBASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 PPIA-208ENST00000489459 907 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 CHCHD2P2-201ENST00000503744 321 ntBASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 AC005357.2-202ENST00000590507 1060 ntBASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 AL359091.4-201ENST00000610052 409 ntBASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 PPIA-210ENST00000620047 827 ntTSL 5 BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 AC073592.2-201ENST00000623062 780 ntBASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 AC007191.1-201ENST00000623179 2995 ntBASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 MEX3B-202ENST00000558133 4333 ntBASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 AC025183.3-201ENST00000623526 1482 ntBASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC3Q9BQI4 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms