Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 RPL14-203ENST00000416518 812 ntTSL 3 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 AC073869.2-201ENST00000417338 1026 ntBASIC13.51□□□□□ -0.25
COL28A1Q2UY09 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 HFE-209ENST00000461397 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 RN7SL288P-201ENST00000490496 291 ntBASIC13.51□□□□□ -0.25
COL28A1Q2UY09 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 AC022447.6-201ENST00000515522 438 ntBASIC13.51□□□□□ -0.25
COL28A1Q2UY09 AC090136.2-201ENST00000517809 420 ntBASIC13.51□□□□□ -0.25
COL28A1Q2UY09 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 C11orf58-207ENST00000525684 575 ntTSL 2 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 C11orf58-209ENST00000528634 776 ntTSL 5 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 TRMT112P3-201ENST00000580149 358 ntBASIC13.51□□□□□ -0.25
COL28A1Q2UY09 AL160191.2-201ENST00000603975 601 ntBASIC13.51□□□□□ -0.25
COL28A1Q2UY09 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 FES-203ENST00000394302 2133 ntTSL 5 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC13.51□□□□□ -0.25
COL28A1Q2UY09 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 ABR-205ENST00000544583 5595 ntTSL 2 BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 CERKL-206ENST00000410087 3208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 TEKT4P2-202ENST00000559466 1312 ntBASIC13.5□□□□□ -0.25
COL28A1Q2UY09 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 PHACTR1-203ENST00000379335 943 ntTSL 2 BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 PPP1R7-205ENST00000404405 1009 ntTSL 3 BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 AL035414.1-201ENST00000451327 857 ntBASIC13.5□□□□□ -0.25
COL28A1Q2UY09 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 AC008026.2-201ENST00000495438 348 ntBASIC13.5□□□□□ -0.25
COL28A1Q2UY09 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 IGHEP2-201ENST00000519308 1256 ntBASIC13.5□□□□□ -0.25
COL28A1Q2UY09 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 URB1-AS1-201ENST00000534991 831 ntBASIC13.5□□□□□ -0.25
COL28A1Q2UY09 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 FBXO36P1-201ENST00000579006 471 ntBASIC13.5□□□□□ -0.25
COL28A1Q2UY09 PHF23-213ENST00000613632 850 ntTSL 5 BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
COL28A1Q2UY09 AC004466.2-201ENST00000614749 516 ntBASIC13.5□□□□□ -0.25
COL28A1Q2UY09 AL512324.3-201ENST00000619383 882 ntBASIC13.5□□□□□ -0.25
COL28A1Q2UY09 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC13.5□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms