Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC12.51□□□□□ -0.41
H3F3AP84243 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC12.51□□□□□ -0.41
H3F3AP84243 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC12.51□□□□□ -0.41
H3F3AP84243 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC12.51□□□□□ -0.41
H3F3AP84243 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC12.51□□□□□ -0.41
H3F3AP84243 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC12.51□□□□□ -0.41
H3F3AP84243 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 CD81-209ENST00000492627 886 ntTSL 3 BASIC12.51□□□□□ -0.41
H3F3AP84243 AC134698.3-201ENST00000523880 214 ntBASIC12.51□□□□□ -0.41
H3F3AP84243 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC12.51□□□□□ -0.41
H3F3AP84243 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC12.51□□□□□ -0.41
H3F3AP84243 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC12.51□□□□□ -0.41
H3F3AP84243 AC132825.4-202ENST00000578792 434 ntBASIC12.51□□□□□ -0.41
H3F3AP84243 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC12.51□□□□□ -0.41
H3F3AP84243 AC007718.1-201ENST00000621078 280 ntBASIC12.51□□□□□ -0.41
H3F3AP84243 AL161773.1-201ENST00000624845 863 ntBASIC12.51□□□□□ -0.41
H3F3AP84243 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC12.51□□□□□ -0.41
H3F3AP84243 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
H3F3AP84243 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC12.51□□□□□ -0.41
H3F3AP84243 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 FUK-202ENST00000378912 3925 ntTSL 2 BASIC12.51□□□□□ -0.41
H3F3AP84243 TCAF1P1-201ENST00000414990 2232 ntBASIC12.51□□□□□ -0.41
H3F3AP84243 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC12.51□□□□□ -0.41
H3F3AP84243 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC12.51□□□□□ -0.41
H3F3AP84243 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
H3F3AP84243 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC12.51□□□□□ -0.41
H3F3AP84243 CHD5-201ENST00000262450 9646 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC12.51□□□□□ -0.41
H3F3AP84243 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC12.51□□□□□ -0.41
H3F3AP84243 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
H3F3AP84243 ABCD1P2-201ENST00000429313 1601 ntBASIC12.51□□□□□ -0.41
H3F3AP84243 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC12.51□□□□□ -0.41
H3F3AP84243 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC12.51□□□□□ -0.41
H3F3AP84243 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
H3F3AP84243 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
H3F3AP84243 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
H3F3AP84243 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
H3F3AP84243 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
H3F3AP84243 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
H3F3AP84243 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
H3F3AP84243 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
H3F3AP84243 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC12.5□□□□□ -0.41
H3F3AP84243 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
H3F3AP84243 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC12.5□□□□□ -0.41
H3F3AP84243 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
H3F3AP84243 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC12.5□□□□□ -0.41
H3F3AP84243 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
H3F3AP84243 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC12.5□□□□□ -0.41
H3F3AP84243 SAT1-201ENST00000379251 801 ntTSL 2 BASIC12.5□□□□□ -0.41
H3F3AP84243 SAT1-202ENST00000379253 909 ntTSL 2 BASIC12.5□□□□□ -0.41
H3F3AP84243 SAT1-203ENST00000379254 868 ntTSL 3 BASIC12.5□□□□□ -0.41
H3F3AP84243 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
H3F3AP84243 AL627231.1-201ENST00000394467 1125 ntBASIC12.5□□□□□ -0.41
H3F3AP84243 AL592076.1-201ENST00000424448 303 ntBASIC12.5□□□□□ -0.41
H3F3AP84243 AC018638.5-201ENST00000450885 754 ntBASIC12.5□□□□□ -0.41
H3F3AP84243 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC12.5□□□□□ -0.41
H3F3AP84243 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC12.5□□□□□ -0.41
H3F3AP84243 UPF3AP2-201ENST00000457924 1132 ntBASIC12.5□□□□□ -0.41
H3F3AP84243 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
H3F3AP84243 AC095040.1-201ENST00000513286 675 ntBASIC12.5□□□□□ -0.41
H3F3AP84243 NAA40-205ENST00000539656 577 ntTSL 4 BASIC12.5□□□□□ -0.41
H3F3AP84243 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC12.5□□□□□ -0.41
H3F3AP84243 AC009145.4-201ENST00000625119 1294 ntBASIC12.5□□□□□ -0.41
H3F3AP84243 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC12.5□□□□□ -0.41
H3F3AP84243 TEKT4P2-202ENST00000559466 1312 ntBASIC12.5□□□□□ -0.41
H3F3AP84243 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
H3F3AP84243 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
H3F3AP84243 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
H3F3AP84243 AC138761.6-201ENST00000583997 1423 ntBASIC12.5□□□□□ -0.41
H3F3AP84243 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC12.5□□□□□ -0.41
H3F3AP84243 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC12.5□□□□□ -0.41
H3F3AP84243 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
H3F3AP84243 PHB-210ENST00000511832 1509 ntTSL 2 BASIC12.5□□□□□ -0.41
H3F3AP84243 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC12.5□□□□□ -0.41
H3F3AP84243 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
H3F3AP84243 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC12.5□□□□□ -0.41
H3F3AP84243 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC12.5□□□□□ -0.41
H3F3AP84243 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC12.5□□□□□ -0.41
H3F3AP84243 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
H3F3AP84243 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
H3F3AP84243 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
H3F3AP84243 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
H3F3AP84243 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC12.5□□□□□ -0.41
H3F3AP84243 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
H3F3AP84243 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms