Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 STK25-235ENST00000543554 2556 ntTSL 2 BASIC12.55□□□□□ -0.4
CLRN1P58418 UQCRB-201ENST00000287022 5575 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLRN1P58418 AC105206.1-202ENST00000314927 2368 ntBASIC12.55□□□□□ -0.4
CLRN1P58418 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
CLRN1P58418 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC12.55□□□□□ -0.4
CLRN1P58418 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CLRN1P58418 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLRN1P58418 IRAK1BP1-201ENST00000369940 5656 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CLRN1P58418 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CLRN1P58418 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CLRN1P58418 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC12.54□□□□□ -0.4
CLRN1P58418 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CLRN1P58418 AC004899.2-201ENST00000622993 3860 ntBASIC12.54□□□□□ -0.4
CLRN1P58418 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CLRN1P58418 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC12.54□□□□□ -0.4
CLRN1P58418 AC011481.3-201ENST00000623895 5594 ntBASIC12.54□□□□□ -0.4
CLRN1P58418 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CLRN1P58418 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
CLRN1P58418 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CLRN1P58418 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
CLRN1P58418 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC12.54□□□□□ -0.4
CLRN1P58418 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
CLRN1P58418 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CLRN1P58418 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CLRN1P58418 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CLRN1P58418 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CLRN1P58418 FAM86MP-201ENST00000340703 885 ntBASIC12.54□□□□□ -0.4
CLRN1P58418 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CLRN1P58418 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CLRN1P58418 AC239868.1-201ENST00000369385 493 ntBASIC12.54□□□□□ -0.4
CLRN1P58418 BAX-205ENST00000391871 687 ntTSL 5 BASIC12.54□□□□□ -0.4
CLRN1P58418 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
CLRN1P58418 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC12.54□□□□□ -0.4
CLRN1P58418 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
CLRN1P58418 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CLRN1P58418 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
CLRN1P58418 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC12.54□□□□□ -0.4
CLRN1P58418 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
CLRN1P58418 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CLRN1P58418 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC12.54□□□□□ -0.4
CLRN1P58418 ALG1L13P-202ENST00000519320 584 ntBASIC12.54□□□□□ -0.4
CLRN1P58418 KRT8P1-201ENST00000557533 1207 ntBASIC12.54□□□□□ -0.4
CLRN1P58418 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC12.54□□□□□ -0.4
CLRN1P58418 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC12.54□□□□□ -0.4
CLRN1P58418 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CLRN1P58418 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC12.54□□□□□ -0.4
CLRN1P58418 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
CLRN1P58418 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC12.54□□□□□ -0.4
CLRN1P58418 AC100757.4-201ENST00000626934 759 ntBASIC12.54□□□□□ -0.4
CLRN1P58418 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CLRN1P58418 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
CLRN1P58418 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC12.54□□□□□ -0.4
CLRN1P58418 SAMD4A-201ENST00000251091 6565 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CLRN1P58418 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CLRN1P58418 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CLRN1P58418 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC12.54□□□□□ -0.4
CLRN1P58418 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC12.54□□□□□ -0.4
CLRN1P58418 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC12.54□□□□□ -0.4
CLRN1P58418 PRR26-202ENST00000441152 2251 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
CLRN1P58418 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CLRN1P58418 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC12.54□□□□□ -0.4
CLRN1P58418 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CLRN1P58418 IKZF1-211ENST00000440768 5511 ntTSL 5 BASIC12.54□□□□□ -0.4
CLRN1P58418 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC12.54□□□□□ -0.4
CLRN1P58418 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
CLRN1P58418 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
CLRN1P58418 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
CLRN1P58418 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
CLRN1P58418 RTL10-202ENST00000405640 6785 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
CLRN1P58418 SMAD2-203ENST00000402690 12075 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CLRN1P58418 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
CLRN1P58418 KPNA4-201ENST00000334256 8981 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CLRN1P58418 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC12.53□□□□□ -0.4
CLRN1P58418 PERP-201ENST00000421351 4290 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CLRN1P58418 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC12.53□□□□□ -0.4
CLRN1P58418 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC12.53□□□□□ -0.4
CLRN1P58418 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC12.53□□□□□ -0.4
CLRN1P58418 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC12.53□□□□□ -0.4
CLRN1P58418 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CLRN1P58418 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CLRN1P58418 AC090114.2-201ENST00000608477 7054 ntBASIC12.53□□□□□ -0.4
CLRN1P58418 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
CLRN1P58418 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CLRN1P58418 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
CLRN1P58418 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CLRN1P58418 AL008707.1-201ENST00000422498 534 ntBASIC12.53□□□□□ -0.4
CLRN1P58418 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC12.53□□□□□ -0.4
CLRN1P58418 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC12.53□□□□□ -0.4
CLRN1P58418 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC12.53□□□□□ -0.4
CLRN1P58418 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC12.53□□□□□ -0.4
CLRN1P58418 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC12.53□□□□□ -0.4
CLRN1P58418 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC12.53□□□□□ -0.4
CLRN1P58418 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC12.53□□□□□ -0.4
CLRN1P58418 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CLRN1P58418 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC12.53□□□□□ -0.4
CLRN1P58418 AC073869.1-201ENST00000415574 2762 ntBASIC12.53□□□□□ -0.4
CLRN1P58418 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CLRN1P58418 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC12.53□□□□□ -0.4
CLRN1P58418 TNC-212ENST00000542877 5517 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CLRN1P58418 CACNA1G-211ENST00000503485 6768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms