Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC14.72□□□□□ -0.05
BDNFP23560 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC14.72□□□□□ -0.05
BDNFP23560 AL009176.1-201ENST00000607876 650 ntBASIC14.72□□□□□ -0.05
BDNFP23560 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
BDNFP23560 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC14.72□□□□□ -0.05
BDNFP23560 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
BDNFP23560 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC14.72□□□□□ -0.05
BDNFP23560 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 C17orf80-202ENST00000268942 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
BDNFP23560 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
BDNFP23560 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
BDNFP23560 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
BDNFP23560 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
BDNFP23560 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
BDNFP23560 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
BDNFP23560 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
BDNFP23560 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
BDNFP23560 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
BDNFP23560 CR383656.2-201ENST00000548656 2254 ntBASIC14.71□□□□□ -0.05
BDNFP23560 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
BDNFP23560 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
BDNFP23560 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
BDNFP23560 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
BDNFP23560 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
BDNFP23560 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
BDNFP23560 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
BDNFP23560 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
BDNFP23560 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
BDNFP23560 MIR1307-201ENST00000408840 149 ntBASIC14.71□□□□□ -0.05
BDNFP23560 EEF1DP2-201ENST00000433698 843 ntBASIC14.71□□□□□ -0.05
BDNFP23560 AC253536.4-201ENST00000440539 267 ntBASIC14.71□□□□□ -0.05
BDNFP23560 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC14.71□□□□□ -0.05
BDNFP23560 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC14.71□□□□□ -0.05
BDNFP23560 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
BDNFP23560 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC14.71□□□□□ -0.05
BDNFP23560 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC14.71□□□□□ -0.05
BDNFP23560 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
BDNFP23560 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC14.71□□□□□ -0.05
BDNFP23560 AC105137.3-201ENST00000617588 984 ntBASIC14.71□□□□□ -0.05
BDNFP23560 CR392039.2-201ENST00000623182 509 ntBASIC14.71□□□□□ -0.05
BDNFP23560 ST5-261ENST00000626808 1071 ntTSL 5 BASIC14.71□□□□□ -0.05
BDNFP23560 HELLS-212ENST00000630929 400 ntTSL 5 BASIC14.71□□□□□ -0.05
BDNFP23560 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
BDNFP23560 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC14.71□□□□□ -0.05
BDNFP23560 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
BDNFP23560 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
BDNFP23560 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
BDNFP23560 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
BDNFP23560 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC14.71□□□□□ -0.05
BDNFP23560 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
BDNFP23560 AC073869.1-201ENST00000415574 2762 ntBASIC14.71□□□□□ -0.06
BDNFP23560 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.06
BDNFP23560 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
BDNFP23560 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC14.71□□□□□ -0.06
BDNFP23560 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
BDNFP23560 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
BDNFP23560 DUSP10-201ENST00000366899 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
BDNFP23560 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
BDNFP23560 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC14.7□□□□□ -0.06
BDNFP23560 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
BDNFP23560 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
BDNFP23560 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
BDNFP23560 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
BDNFP23560 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
BDNFP23560 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC14.7□□□□□ -0.06
BDNFP23560 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC14.7□□□□□ -0.06
BDNFP23560 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
BDNFP23560 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC14.7□□□□□ -0.06
BDNFP23560 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
BDNFP23560 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
BDNFP23560 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
BDNFP23560 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
BDNFP23560 OR2W2P-201ENST00000406313 909 ntBASIC14.7□□□□□ -0.06
BDNFP23560 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
BDNFP23560 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
BDNFP23560 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC14.7□□□□□ -0.06
BDNFP23560 AC012362.1-201ENST00000434906 739 ntBASIC14.7□□□□□ -0.06
BDNFP23560 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC14.7□□□□□ -0.06
BDNFP23560 BUD31-205ENST00000456893 512 ntTSL 5 BASIC14.7□□□□□ -0.06
BDNFP23560 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC14.7□□□□□ -0.06
BDNFP23560 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC14.7□□□□□ -0.06
BDNFP23560 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC14.7□□□□□ -0.06
BDNFP23560 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC14.7□□□□□ -0.06
BDNFP23560 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
BDNFP23560 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
BDNFP23560 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC14.7□□□□□ -0.06
BDNFP23560 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
BDNFP23560 AC012073.1-201ENST00000606114 1108 ntBASIC14.7□□□□□ -0.06
BDNFP23560 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
BDNFP23560 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 90.9 ms