Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC15.67■□□□□ 0.1
CIITAP33076 ZIK1-201ENST00000307468 2510 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC15.67■□□□□ 0.1
CIITAP33076 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC15.67■□□□□ 0.1
CIITAP33076 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC15.67■□□□□ 0.1
CIITAP33076 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
CIITAP33076 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
CIITAP33076 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CIITAP33076 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC15.66■□□□□ 0.1
CIITAP33076 DDX46-212ENST00000628477 1584 ntTSL 5 BASIC15.66■□□□□ 0.1
CIITAP33076 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CIITAP33076 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CIITAP33076 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC15.66■□□□□ 0.1
CIITAP33076 AC090502.4-201ENST00000551714 1386 ntBASIC15.66■□□□□ 0.1
CIITAP33076 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CIITAP33076 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CIITAP33076 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CIITAP33076 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
CIITAP33076 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CIITAP33076 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CIITAP33076 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CIITAP33076 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CIITAP33076 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC15.66■□□□□ 0.1
CIITAP33076 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
CIITAP33076 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC15.66■□□□□ 0.1
CIITAP33076 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC15.66■□□□□ 0.1
CIITAP33076 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CIITAP33076 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
CIITAP33076 KRT18P62-201ENST00000446618 1287 ntBASIC15.66■□□□□ 0.1
CIITAP33076 AC079112.1-201ENST00000454972 939 ntBASIC15.66■□□□□ 0.1
CIITAP33076 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC15.66■□□□□ 0.1
CIITAP33076 EEF1GP8-201ENST00000506566 1154 ntBASIC15.66■□□□□ 0.1
CIITAP33076 RPS23-204ENST00000507980 836 ntTSL 2 BASIC15.66■□□□□ 0.1
CIITAP33076 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC15.66■□□□□ 0.1
CIITAP33076 AC068152.1-205ENST00000575173 1081 ntTSL 3 BASIC15.66■□□□□ 0.1
CIITAP33076 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC15.66■□□□□ 0.1
CIITAP33076 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC15.66■□□□□ 0.1
CIITAP33076 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC15.66■□□□□ 0.1
CIITAP33076 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CIITAP33076 SYBU-217ENST00000528331 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CIITAP33076 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC15.66■□□□□ 0.1
CIITAP33076 CR383656.2-201ENST00000548656 2254 ntBASIC15.66■□□□□ 0.1
CIITAP33076 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CIITAP33076 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC15.66■□□□□ 0.1
CIITAP33076 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CIITAP33076 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CIITAP33076 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC15.66■□□□□ 0.1
CIITAP33076 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC15.66■□□□□ 0.1
CIITAP33076 CSF3-204ENST00000394149 1583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CIITAP33076 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC15.66■□□□□ 0.1
CIITAP33076 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC15.66■□□□□ 0.1
CIITAP33076 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CIITAP33076 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CIITAP33076 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CIITAP33076 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC15.65■□□□□ 0.1
CIITAP33076 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CIITAP33076 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC15.65■□□□□ 0.1
CIITAP33076 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CIITAP33076 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
CIITAP33076 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CIITAP33076 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC15.65■□□□□ 0.1
CIITAP33076 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CIITAP33076 AL359845.1-201ENST00000458202 1648 ntBASIC15.65■□□□□ 0.1
CIITAP33076 NIN-202ENST00000324330 4364 ntTSL 5 BASIC15.65■□□□□ 0.1
CIITAP33076 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CIITAP33076 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CIITAP33076 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CIITAP33076 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
CIITAP33076 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CIITAP33076 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CIITAP33076 AC005840.4-201ENST00000541242 2494 ntBASIC15.65■□□□□ 0.1
CIITAP33076 AC130686.1-201ENST00000622936 2466 ntBASIC15.65■□□□□ 0.1
CIITAP33076 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CIITAP33076 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CIITAP33076 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CIITAP33076 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
CIITAP33076 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC15.65■□□□□ 0.1
CIITAP33076 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC15.65■□□□□ 0.1
CIITAP33076 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC15.65■□□□□ 0.1
CIITAP33076 HNRNPA1P2-207ENST00000432375 960 ntBASIC15.65■□□□□ 0.1
CIITAP33076 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC15.65■□□□□ 0.1
CIITAP33076 AC104784.1-201ENST00000473096 294 ntBASIC15.65■□□□□ 0.1
CIITAP33076 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC15.65■□□□□ 0.1
CIITAP33076 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC15.65■□□□□ 0.1
CIITAP33076 AC090617.4-201ENST00000572404 422 ntTSL 3 BASIC15.65■□□□□ 0.1
CIITAP33076 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC15.65■□□□□ 0.1
CIITAP33076 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CIITAP33076 AC073869.1-201ENST00000415574 2762 ntBASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms