Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC12□□□□□ -0.49
SDCBPO00560 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
SDCBPO00560 ZNF71-201ENST00000328070 5428 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
SDCBPO00560 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC12□□□□□ -0.49
SDCBPO00560 DHX34-201ENST00000328771 4372 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
SDCBPO00560 DLGAP1-AS1-201ENST00000317114 1966 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 PCDHGA3-201ENST00000253812 4771 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 LSM14A-201ENST00000433627 3424 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC11.99□□□□□ -0.49
SDCBPO00560 CSPG4P11-201ENST00000560634 4910 ntBASIC11.99□□□□□ -0.49
SDCBPO00560 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 SH2D7-202ENST00000409568 2162 ntTSL 5 BASIC11.99□□□□□ -0.49
SDCBPO00560 TRHDE-AS1-201ENST00000426250 3684 ntTSL 5 BASIC11.99□□□□□ -0.49
SDCBPO00560 MYO9A-202ENST00000424560 4008 ntTSL 5 BASIC11.99□□□□□ -0.49
SDCBPO00560 CICP1-201ENST00000416803 2410 ntBASIC11.99□□□□□ -0.49
SDCBPO00560 EFHC2-202ENST00000420999 2464 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 UNC13D-201ENST00000207549 4393 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 PJA1-203ENST00000374583 2692 ntAPPRIS P4 BASIC11.99□□□□□ -0.49
SDCBPO00560 EPN2-202ENST00000347697 4664 ntAPPRIS ALT1 TSL 5 BASIC11.99□□□□□ -0.49
SDCBPO00560 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 ARHGEF4-217ENST00000611048 3486 ntTSL 5 BASIC11.99□□□□□ -0.49
SDCBPO00560 ZNF689-201ENST00000287461 3547 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 GPRASP1-202ENST00000415986 5877 ntAPPRIS P1 TSL 4 BASIC11.99□□□□□ -0.49
SDCBPO00560 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 AK6-201ENST00000380818 1183 ntTSL 2 BASIC11.99□□□□□ -0.49
SDCBPO00560 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC11.99□□□□□ -0.49
SDCBPO00560 GAPDHP21-201ENST00000450301 1010 ntBASIC11.99□□□□□ -0.49
SDCBPO00560 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC11.99□□□□□ -0.49
SDCBPO00560 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
SDCBPO00560 HNRNPA1P48-202ENST00000565308 961 ntBASIC11.99□□□□□ -0.49
SDCBPO00560 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC11.99□□□□□ -0.49
SDCBPO00560 AC132192.2-201ENST00000596206 1147 ntBASIC11.99□□□□□ -0.49
SDCBPO00560 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC11.99□□□□□ -0.49
SDCBPO00560 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC11.99□□□□□ -0.49
SDCBPO00560 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC11.99□□□□□ -0.49
SDCBPO00560 E2F3P2-201ENST00000447755 1422 ntBASIC11.99□□□□□ -0.49
SDCBPO00560 ZNF180-201ENST00000221327 4335 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 AC024075.2-201ENST00000598112 1473 ntBASIC11.99□□□□□ -0.49
SDCBPO00560 MYLK-202ENST00000354792 7531 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
SDCBPO00560 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 POM121L14P-201ENST00000406100 1558 ntBASIC11.99□□□□□ -0.49
SDCBPO00560 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC11.99□□□□□ -0.49
SDCBPO00560 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC11.99□□□□□ -0.49
SDCBPO00560 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
SDCBPO00560 SERPINI1-201ENST00000295777 1907 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 DSCAML1-203ENST00000527706 6099 ntTSL 5 BASIC11.99□□□□□ -0.49
SDCBPO00560 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC11.99□□□□□ -0.49
SDCBPO00560 ADGRG6-204ENST00000367609 6887 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 BCCIP-202ENST00000299130 2337 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 GCOM1-214ENST00000587652 2329 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
SDCBPO00560 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC11.99□□□□□ -0.49
SDCBPO00560 CEMIP-203ENST00000394685 7357 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 COPS7B-223ENST00000611614 2468 ntTSL 3 BASIC11.99□□□□□ -0.49
SDCBPO00560 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC11.99□□□□□ -0.49
SDCBPO00560 NCSTN-201ENST00000294785 2936 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 ATG4C-201ENST00000317868 2938 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 BCAS3-221ENST00000588874 2948 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
SDCBPO00560 RBSN-207ENST00000476527 3005 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
SDCBPO00560 TTC39B-201ENST00000297615 3053 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
SDCBPO00560 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
SDCBPO00560 SH2D5-201ENST00000375031 3705 ntTSL 2 BASIC11.99□□□□□ -0.49
SDCBPO00560 YLPM1-207ENST00000552421 4899 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
SDCBPO00560 MTMR4-204ENST00000579925 5622 ntTSL 5 BASIC11.98□□□□□ -0.49
SDCBPO00560 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
SDCBPO00560 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
SDCBPO00560 AC012435.1-201ENST00000563287 3385 ntTSL 2 BASIC11.98□□□□□ -0.49
SDCBPO00560 ANGPTL2-201ENST00000373417 2575 ntTSL 2 BASIC11.98□□□□□ -0.49
SDCBPO00560 ABCB7-203ENST00000373394 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC11.98□□□□□ -0.49
SDCBPO00560 OPN4-201ENST00000241891 2308 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
SDCBPO00560 AP003969.2-201ENST00000623739 2275 ntBASIC11.98□□□□□ -0.49
SDCBPO00560 MAP7D2-204ENST00000452324 2233 ntAPPRIS ALT2 TSL 2 BASIC11.98□□□□□ -0.49
SDCBPO00560 FUT3-207ENST00000589620 2239 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
SDCBPO00560 VAMP2-201ENST00000316509 2153 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
SDCBPO00560 AC115284.2-201ENST00000624646 2054 ntBASIC11.98□□□□□ -0.49
SDCBPO00560 NTN4-203ENST00000538383 1971 ntTSL 2 BASIC11.98□□□□□ -0.49
SDCBPO00560 LILRA1-201ENST00000251372 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
SDCBPO00560 CYP2J2-201ENST00000371204 1896 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
SDCBPO00560 IKZF1-203ENST00000346667 5376 ntTSL 5 BASIC11.98□□□□□ -0.49
SDCBPO00560 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
SDCBPO00560 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC11.98□□□□□ -0.49
SDCBPO00560 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC11.98□□□□□ -0.49
SDCBPO00560 MIR34AHG-203ENST00000635687 4211 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
SDCBPO00560 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
SDCBPO00560 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC11.98□□□□□ -0.49
SDCBPO00560 STXBP1-202ENST00000373302 3967 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
SDCBPO00560 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
SDCBPO00560 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
SDCBPO00560 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC11.98□□□□□ -0.49
SDCBPO00560 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC11.98□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms