Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 GPR39-201ENST00000329321 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 MDH2-203ENST00000432020 1548 ntTSL 2 BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 ALG8-202ENST00000376156 1677 ntTSL 2 BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 FBRSL1-205ENST00000542061 3175 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
CCDC28BQ9BUN5 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 DQX1-202ENST00000404568 2689 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 PEAR1-201ENST00000292357 4866 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 DAB2IP-202ENST00000309989 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 HERC3-203ENST00000407637 2634 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 HOXB13-201ENST00000290295 3467 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 APOL5-201ENST00000249044 1438 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 E2F3P2-201ENST00000447755 1422 ntBASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 SRP54-201ENST00000216774 2279 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 MAX-218ENST00000557746 571 ntTSL 4 BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 TOX2-203ENST00000372999 2519 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 EDARADD-202ENST00000359362 3097 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 CSF3R-201ENST00000331941 2375 ntTSL 5 BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 MGRN1-211ENST00000588994 1665 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 DNAJC14-202ENST00000317287 2774 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 CXCR5-201ENST00000292174 4431 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 SLC46A1-208ENST00000618626 5363 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 TNFSF8-201ENST00000223795 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 NEU3-204ENST00000531509 2468 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 ZNF239-205ENST00000535642 1904 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 PCDHGA3-201ENST00000253812 4771 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 MAMDC4-201ENST00000317446 3658 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 CMIP-208ENST00000566462 3512 ntTSL 4 BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 LRRC41-206ENST00000615587 2842 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CCDC28BQ9BUN5 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 RPL13AP3-202ENST00000494676 1473 ntBASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 ZFYVE27-201ENST00000337540 2927 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 LINC01993-201ENST00000374945 2934 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 ZIK1-201ENST00000307468 2510 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 NSF-201ENST00000398238 3983 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 LINC00115-201ENST00000473798 1317 ntBASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 SLC5A5-201ENST00000222248 3576 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 WTH3DI-201ENST00000623617 3032 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 HNRNPH1-202ENST00000356731 3667 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 NTNG1-206ENST00000370071 3149 ntTSL 5 BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 RPS15A-213ENST00000576436 2190 ntTSL 4 BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 AC092933.1-201ENST00000393644 945 ntBASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 FAM207CP-201ENST00000443486 507 ntBASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 AC003686.1-201ENST00000550956 1034 ntBASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 AP3M2-207ENST00000518421 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 TMEM57-201ENST00000374343 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 NAA15-202ENST00000398947 6072 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 MANEA-AS1-201ENST00000564541 2268 ntBASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 CYB5A-202ENST00000340533 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 INPP5J-208ENST00000412277 3512 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 ZHX2-201ENST00000314393 4624 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 GJB5-201ENST00000338513 1355 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 LINC01756-201ENST00000417651 2148 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 FOXN4-202ENST00000355216 2958 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 EGFR-207ENST00000455089 3844 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 AL590644.1-201ENST00000412427 4676 ntTSL 4 BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 PLPP6-201ENST00000381883 2944 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
CCDC28BQ9BUN5 GDAP2-201ENST00000369442 2436 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CCDC28BQ9BUN5 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms