Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC13.02□□□□□ -0.33
COL5A1P20908 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL5A1P20908 AL928654.5-201ENST00000624831 2501 ntBASIC13.02□□□□□ -0.33
COL5A1P20908 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC13.02□□□□□ -0.33
COL5A1P20908 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC13.02□□□□□ -0.33
COL5A1P20908 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL5A1P20908 APEX1-201ENST00000216714 1484 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL5A1P20908 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL5A1P20908 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL5A1P20908 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL5A1P20908 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL5A1P20908 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL5A1P20908 ARRDC5-201ENST00000381781 1638 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
COL5A1P20908 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC13.02□□□□□ -0.33
COL5A1P20908 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL5A1P20908 GOLGA8N-205ENST00000569659 1791 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
COL5A1P20908 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
COL5A1P20908 CLEC10A-206ENST00000576617 1800 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL5A1P20908 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
COL5A1P20908 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC13.02□□□□□ -0.33
COL5A1P20908 CFL1P6-201ENST00000400899 494 ntBASIC13.02□□□□□ -0.33
COL5A1P20908 LINC00484-201ENST00000414768 561 ntTSL 5 BASIC13.02□□□□□ -0.33
COL5A1P20908 KCNMA1-AS1-201ENST00000426234 863 ntTSL 5 BASIC13.02□□□□□ -0.33
COL5A1P20908 AC098649.1-201ENST00000427258 569 ntTSL 4 BASIC13.02□□□□□ -0.33
COL5A1P20908 CIDEC-205ENST00000443115 443 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL5A1P20908 KCNC4-AS1-201ENST00000455967 748 ntTSL 2 BASIC13.02□□□□□ -0.33
COL5A1P20908 AF186996.6-201ENST00000485294 149 ntBASIC13.02□□□□□ -0.33
COL5A1P20908 CETN3-205ENST00000522842 664 ntTSL 2 BASIC13.02□□□□□ -0.33
COL5A1P20908 AC073896.3-201ENST00000546789 437 ntTSL 5 BASIC13.02□□□□□ -0.33
COL5A1P20908 AC116025.1-201ENST00000575404 415 ntTSL 3 BASIC13.02□□□□□ -0.33
COL5A1P20908 EEF1DP7-201ENST00000580496 513 ntBASIC13.02□□□□□ -0.33
COL5A1P20908 AC002985.1-201ENST00000596918 685 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
COL5A1P20908 HCG18-241ENST00000602290 821 ntTSL 2 BASIC13.02□□□□□ -0.33
COL5A1P20908 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC13.02□□□□□ -0.33
COL5A1P20908 AC005865.2-202ENST00000635814 725 ntBASIC13.02□□□□□ -0.33
COL5A1P20908 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL5A1P20908 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC13.01□□□□□ -0.33
COL5A1P20908 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL5A1P20908 ANAPC15-203ENST00000502597 1481 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL5A1P20908 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL5A1P20908 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL5A1P20908 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL5A1P20908 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
COL5A1P20908 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC13.01□□□□□ -0.33
COL5A1P20908 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL5A1P20908 NCLP1-201ENST00000445357 1963 ntBASIC13.01□□□□□ -0.33
COL5A1P20908 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL5A1P20908 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL5A1P20908 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL5A1P20908 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC13.01□□□□□ -0.33
COL5A1P20908 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL5A1P20908 DBNDD2-207ENST00000372722 1202 ntTSL 3 BASIC13.01□□□□□ -0.33
COL5A1P20908 PHACTR1-203ENST00000379335 943 ntTSL 2 BASIC13.01□□□□□ -0.33
COL5A1P20908 KIR2DL4-207ENST00000396293 715 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL5A1P20908 AC108879.1-201ENST00000438026 828 ntTSL 3 BASIC13.01□□□□□ -0.33
COL5A1P20908 AP005273.1-201ENST00000444862 522 ntTSL 3 BASIC13.01□□□□□ -0.33
COL5A1P20908 AL353653.1-201ENST00000452336 638 ntTSL 2 BASIC13.01□□□□□ -0.33
COL5A1P20908 YBX1P3-201ENST00000468366 909 ntBASIC13.01□□□□□ -0.33
COL5A1P20908 NMNAT3-212ENST00000511444 873 ntTSL 3 BASIC13.01□□□□□ -0.33
COL5A1P20908 AC025576.1-201ENST00000536455 462 ntTSL 5 BASIC13.01□□□□□ -0.33
COL5A1P20908 LAMTOR1-208ENST00000545249 965 ntTSL 3 BASIC13.01□□□□□ -0.33
COL5A1P20908 DLX6-203ENST00000555308 666 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
COL5A1P20908 EMP3-204ENST00000596315 761 ntTSL 2 BASIC13.01□□□□□ -0.33
COL5A1P20908 AP001043.1-206ENST00000613045 730 ntTSL 5 BASIC13.01□□□□□ -0.33
COL5A1P20908 FCGR3A-208ENST00000638849 873 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL5A1P20908 AC026271.1-201ENST00000447794 1348 ntBASIC13.01□□□□□ -0.33
COL5A1P20908 AC026786.1-201ENST00000540096 1374 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
COL5A1P20908 EEF1G-201ENST00000329251 1523 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL5A1P20908 HLA-DQA1-201ENST00000343139 1591 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
COL5A1P20908 ERG-211ENST00000453032 1595 ntTSL 2 BASIC13.01□□□□□ -0.33
COL5A1P20908 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
COL5A1P20908 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC13.01□□□□□ -0.33
COL5A1P20908 GTF2A1L-201ENST00000403751 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL5A1P20908 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL5A1P20908 SFPQP1-201ENST00000446621 1786 ntBASIC13.01□□□□□ -0.33
COL5A1P20908 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
COL5A1P20908 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC13.01□□□□□ -0.33
COL5A1P20908 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL5A1P20908 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL5A1P20908 AP000437.1-201ENST00000624057 2085 ntBASIC13.01□□□□□ -0.33
COL5A1P20908 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL5A1P20908 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL5A1P20908 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL5A1P20908 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC13.01□□□□□ -0.33
COL5A1P20908 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
COL5A1P20908 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
COL5A1P20908 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
COL5A1P20908 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL5A1P20908 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL5A1P20908 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC13□□□□□ -0.33
COL5A1P20908 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC13□□□□□ -0.33
COL5A1P20908 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
COL5A1P20908 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
COL5A1P20908 SLC25A3-202ENST00000228318 1678 ntAPPRIS P4 TSL 5 BASIC13□□□□□ -0.33
COL5A1P20908 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL5A1P20908 PIGB-202ENST00000539642 1668 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
COL5A1P20908 DDC-212ENST00000615193 1674 ntTSL 3 BASIC13□□□□□ -0.33
COL5A1P20908 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
COL5A1P20908 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL5A1P20908 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms