Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 ZBTB7B-203ENST00000417934 4017 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
SOX2P48431 MIEF2-201ENST00000323019 3364 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
SOX2P48431 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
SOX2P48431 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
SOX2P48431 RERG-204ENST00000536465 2134 ntAPPRIS P1 TSL 3 BASIC12.43□□□□□ -0.42
SOX2P48431 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SOX2P48431 MYRF-202ENST00000278836 5927 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
SOX2P48431 DYSF-202ENST00000394120 6543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
SOX2P48431 TMEM168-201ENST00000312814 7470 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SOX2P48431 TTC39A-202ENST00000262676 6287 ntTSL 2 BASIC12.43□□□□□ -0.42
SOX2P48431 TNFRSF8-201ENST00000263932 3686 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SOX2P48431 COPS7B-223ENST00000611614 2468 ntTSL 3 BASIC12.43□□□□□ -0.42
SOX2P48431 CR383656.2-201ENST00000548656 2254 ntBASIC12.43□□□□□ -0.42
SOX2P48431 SALL4P6-201ENST00000429385 1691 ntBASIC12.43□□□□□ -0.42
SOX2P48431 ARPIN-201ENST00000357484 7591 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SOX2P48431 FNIP1-205ENST00000615660 6589 ntTSL 5 BASIC12.43□□□□□ -0.42
SOX2P48431 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SOX2P48431 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
SOX2P48431 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SOX2P48431 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC12.43□□□□□ -0.42
SOX2P48431 AC010141.1-201ENST00000411585 623 ntBASIC12.43□□□□□ -0.42
SOX2P48431 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
SOX2P48431 RGS5-214ENST00000429865 754 ntTSL 3 BASIC12.43□□□□□ -0.42
SOX2P48431 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC12.43□□□□□ -0.42
SOX2P48431 ST13P19-201ENST00000442505 1124 ntBASIC12.43□□□□□ -0.42
SOX2P48431 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
SOX2P48431 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC12.43□□□□□ -0.42
SOX2P48431 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC12.43□□□□□ -0.42
SOX2P48431 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC12.43□□□□□ -0.42
SOX2P48431 RBM8B-201ENST00000555532 525 ntBASIC12.43□□□□□ -0.42
SOX2P48431 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC12.43□□□□□ -0.42
SOX2P48431 DRG2-220ENST00000583355 891 ntTSL 3 BASIC12.43□□□□□ -0.42
SOX2P48431 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC12.43□□□□□ -0.42
SOX2P48431 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
SOX2P48431 AC006453.4-201ENST00000636949 1252 ntBASIC12.43□□□□□ -0.42
SOX2P48431 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC12.43□□□□□ -0.42
SOX2P48431 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC12.43□□□□□ -0.42
SOX2P48431 ATXN2L-225ENST00000570200 3635 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
SOX2P48431 KCNT1-213ENST00000630792 3606 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
SOX2P48431 HAL-202ENST00000538703 2637 ntTSL 2 BASIC12.43□□□□□ -0.42
SOX2P48431 SLC5A8-201ENST00000536262 4178 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SOX2P48431 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SOX2P48431 TUBGCP2-210ENST00000543663 4302 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
SOX2P48431 VILL-201ENST00000283713 2970 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SOX2P48431 TMEM57-201ENST00000374343 3917 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SOX2P48431 SH2D5-201ENST00000375031 3705 ntTSL 2 BASIC12.43□□□□□ -0.42
SOX2P48431 E2F3P2-201ENST00000447755 1422 ntBASIC12.43□□□□□ -0.42
SOX2P48431 NTN4-203ENST00000538383 1971 ntTSL 2 BASIC12.43□□□□□ -0.42
SOX2P48431 NUMA1-234ENST00000620566 7012 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
SOX2P48431 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
SOX2P48431 EPN2-205ENST00000395626 2863 ntTSL 2 BASIC12.43□□□□□ -0.42
SOX2P48431 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
SOX2P48431 TEX35-204ENST00000367642 2452 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
SOX2P48431 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC12.43□□□□□ -0.42
SOX2P48431 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC12.43□□□□□ -0.42
SOX2P48431 AC108024.1-201ENST00000626286 1721 ntBASIC12.42□□□□□ -0.42
SOX2P48431 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
SOX2P48431 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC12.42□□□□□ -0.42
SOX2P48431 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC12.42□□□□□ -0.42
SOX2P48431 SLC44A3-AS1-215ENST00000634870 5956 ntTSL 5 BASIC12.42□□□□□ -0.42
SOX2P48431 HERPUD1-204ENST00000439977 2946 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
SOX2P48431 PPP1R12A-201ENST00000261207 5582 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
SOX2P48431 AL590824.1-201ENST00000403828 1349 ntBASIC12.42□□□□□ -0.42
SOX2P48431 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
SOX2P48431 SEC31A-205ENST00000395310 4259 ntAPPRIS P4 TSL 1 (best) BASIC12.42□□□□□ -0.42
SOX2P48431 SLC6A2-201ENST00000219833 2858 ntTSL 5 BASIC12.42□□□□□ -0.42
SOX2P48431 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC12.42□□□□□ -0.42
SOX2P48431 RALGPS1-201ENST00000259351 6336 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SOX2P48431 ZNF398-201ENST00000426851 5268 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
SOX2P48431 SPICE1-201ENST00000295872 5417 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SOX2P48431 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC12.42□□□□□ -0.42
SOX2P48431 MST1R-201ENST00000296474 4536 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
SOX2P48431 MTHFSD-204ENST00000546093 2451 ntTSL 2 BASIC12.42□□□□□ -0.42
SOX2P48431 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SOX2P48431 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
SOX2P48431 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC12.42□□□□□ -0.42
SOX2P48431 AC005229.1-201ENST00000392885 409 ntBASIC12.42□□□□□ -0.42
SOX2P48431 AC092933.1-201ENST00000393644 945 ntBASIC12.42□□□□□ -0.42
SOX2P48431 GRAP-202ENST00000395635 834 ntTSL 2 BASIC12.42□□□□□ -0.42
SOX2P48431 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
SOX2P48431 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
SOX2P48431 AC016730.1-201ENST00000420828 832 ntTSL 2 BASIC12.42□□□□□ -0.42
SOX2P48431 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC12.42□□□□□ -0.42
SOX2P48431 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC12.42□□□□□ -0.42
SOX2P48431 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC12.42□□□□□ -0.42
SOX2P48431 AL645933.1-201ENST00000440087 609 ntBASIC12.42□□□□□ -0.42
SOX2P48431 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC12.42□□□□□ -0.42
SOX2P48431 FTH1P14-201ENST00000482930 551 ntBASIC12.42□□□□□ -0.42
SOX2P48431 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC12.42□□□□□ -0.42
SOX2P48431 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
SOX2P48431 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC12.42□□□□□ -0.42
SOX2P48431 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC12.42□□□□□ -0.42
SOX2P48431 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC12.42□□□□□ -0.42
SOX2P48431 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC12.42□□□□□ -0.42
SOX2P48431 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC12.42□□□□□ -0.42
SOX2P48431 PPY2P-201ENST00000582808 702 ntBASIC12.42□□□□□ -0.42
SOX2P48431 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
SOX2P48431 AC244669.2-201ENST00000612320 853 ntBASIC12.42□□□□□ -0.42
SOX2P48431 FLT4-212ENST00000619105 3806 ntTSL 5 BASIC12.42□□□□□ -0.42
SOX2P48431 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms