Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 MYL6B-210ENST00000552568 703 ntTSL 5 BASIC13.91□□□□□ -0.18
COL6A3P12111 DIO2-206ENST00000555750 1049 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A3P12111 AC013356.4-201ENST00000558421 482 ntTSL 2 BASIC13.91□□□□□ -0.18
COL6A3P12111 PSME2-213ENST00000560410 755 ntTSL 3 BASIC13.91□□□□□ -0.18
COL6A3P12111 PSME1-210ENST00000561435 945 ntTSL 2 BASIC13.91□□□□□ -0.18
COL6A3P12111 HKR1-222ENST00000591417 525 ntTSL 4 BASIC13.91□□□□□ -0.18
COL6A3P12111 GTF3A-209ENST00000640289 1098 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A3P12111 AC089987.1-202ENST00000641959 426 ntBASIC13.91□□□□□ -0.18
COL6A3P12111 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A3P12111 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A3P12111 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A3P12111 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC13.91□□□□□ -0.18
COL6A3P12111 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A3P12111 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A3P12111 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A3P12111 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A3P12111 ORC5-203ENST00000447452 1409 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A3P12111 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A3P12111 AP001610.1-201ENST00000411427 1116 ntTSL 5 BASIC13.91□□□□□ -0.18
COL6A3P12111 ART2P-201ENST00000415521 822 ntBASIC13.91□□□□□ -0.18
COL6A3P12111 AC114781.1-201ENST00000450559 1028 ntBASIC13.91□□□□□ -0.18
COL6A3P12111 AC011294.1-201ENST00000487094 844 ntTSL 3 BASIC13.91□□□□□ -0.18
COL6A3P12111 NDUFC2-KCTD14-201ENST00000528251 566 ntTSL 4 BASIC13.91□□□□□ -0.18
COL6A3P12111 RPL10P13-201ENST00000550757 303 ntBASIC13.91□□□□□ -0.18
COL6A3P12111 AC005086.1-201ENST00000566572 801 ntTSL 5 BASIC13.91□□□□□ -0.18
COL6A3P12111 AL157392.3-218ENST00000600249 773 ntTSL 5 BASIC13.91□□□□□ -0.18
COL6A3P12111 ZNF101-203ENST00000415784 1552 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A3P12111 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
COL6A3P12111 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A3P12111 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A3P12111 ST3GAL3-202ENST00000330208 1479 ntTSL 5 BASIC13.91□□□□□ -0.18
COL6A3P12111 TRIB1-203ENST00000520847 1332 ntTSL 2 BASIC13.91□□□□□ -0.18
COL6A3P12111 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A3P12111 TCEAL1-201ENST00000372624 1164 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A3P12111 AP000346.2-202ENST00000425948 383 ntBASIC13.91□□□□□ -0.18
COL6A3P12111 AL355309.1-201ENST00000442158 78 ntBASIC13.91□□□□□ -0.18
COL6A3P12111 MIR1914-201ENST00000607800 80 ntBASIC13.91□□□□□ -0.18
COL6A3P12111 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC13.91□□□□□ -0.18
COL6A3P12111 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A3P12111 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
COL6A3P12111 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
COL6A3P12111 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A3P12111 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A3P12111 OPRM1-210ENST00000452687 1352 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A3P12111 AC015959.1-201ENST00000623263 1377 ntBASIC13.9□□□□□ -0.18
COL6A3P12111 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A3P12111 QRFPR-201ENST00000334383 1215 ntTSL 2 BASIC13.9□□□□□ -0.18
COL6A3P12111 IGLV3-21-201ENST00000390308 602 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
COL6A3P12111 KRTAP12-4-201ENST00000391618 447 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
COL6A3P12111 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A3P12111 AC103592.1-201ENST00000394513 664 ntBASIC13.9□□□□□ -0.18
COL6A3P12111 CR769775.1-203ENST00000399894 579 ntTSL 3 BASIC13.9□□□□□ -0.18
COL6A3P12111 AC018511.1-201ENST00000436608 380 ntTSL 5 BASIC13.9□□□□□ -0.18
COL6A3P12111 WASIR2-201ENST00000527434 1054 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A3P12111 AC090376.1-202ENST00000587276 470 ntTSL 3 BASIC13.9□□□□□ -0.18
COL6A3P12111 AL359878.1-201ENST00000381466 1886 ntTSL 2 BASIC13.9□□□□□ -0.18
COL6A3P12111 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A3P12111 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A3P12111 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC13.9□□□□□ -0.18
COL6A3P12111 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC13.9□□□□□ -0.18
COL6A3P12111 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A3P12111 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A3P12111 ST5-258ENST00000534278 1352 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A3P12111 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A3P12111 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
COL6A3P12111 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC13.9□□□□□ -0.18
COL6A3P12111 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A3P12111 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A3P12111 SGCE-201ENST00000265735 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A3P12111 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A3P12111 AC025538.1-201ENST00000510707 1486 ntBASIC13.9□□□□□ -0.18
COL6A3P12111 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A3P12111 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A3P12111 AC026461.4-201ENST00000379816 242 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A3P12111 MAS1LP1-206ENST00000419416 1047 ntBASIC13.9□□□□□ -0.18
COL6A3P12111 AL357558.2-201ENST00000431915 425 ntTSL 2 BASIC13.9□□□□□ -0.18
COL6A3P12111 PGAM5-202ENST00000454808 1084 ntTSL 3 BASIC13.9□□□□□ -0.18
COL6A3P12111 AC139795.1-201ENST00000499314 838 ntTSL 5 BASIC13.9□□□□□ -0.18
COL6A3P12111 ACAP1-204ENST00000570504 274 ntTSL 3 BASIC13.9□□□□□ -0.18
COL6A3P12111 AC008761.2-201ENST00000600512 419 ntTSL 5 BASIC13.9□□□□□ -0.18
COL6A3P12111 IFI27-214ENST00000620396 599 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
COL6A3P12111 SLC7A8-214ENST00000621729 1371 ntTSL 5 BASIC13.9□□□□□ -0.18
COL6A3P12111 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A3P12111 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC13.9□□□□□ -0.19
COL6A3P12111 DKFZP434H168-201ENST00000567381 1905 ntBASIC13.89□□□□□ -0.19
COL6A3P12111 CLNS1A-201ENST00000263309 1172 ntTSL 3 BASIC13.89□□□□□ -0.19
COL6A3P12111 IGLV1-44-201ENST00000390297 467 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
COL6A3P12111 RPSAP46-201ENST00000428316 882 ntBASIC13.89□□□□□ -0.19
COL6A3P12111 AC010677.1-201ENST00000441690 412 ntBASIC13.89□□□□□ -0.19
COL6A3P12111 AL589743.2-201ENST00000547821 602 ntBASIC13.89□□□□□ -0.19
COL6A3P12111 AC002558.2-201ENST00000572193 673 ntTSL 3 BASIC13.89□□□□□ -0.19
COL6A3P12111 MIR6750-201ENST00000617817 75 ntBASIC13.89□□□□□ -0.19
COL6A3P12111 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC13.89□□□□□ -0.19
COL6A3P12111 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A3P12111 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A3P12111 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
COL6A3P12111 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A3P12111 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A3P12111 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A3P12111 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms