Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC12.03□□□□□ -0.48
SDCBPO00560 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC12.03□□□□□ -0.48
SDCBPO00560 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC12.03□□□□□ -0.48
SDCBPO00560 CNN2P10-201ENST00000443067 918 ntBASIC12.03□□□□□ -0.48
SDCBPO00560 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC12.03□□□□□ -0.48
SDCBPO00560 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC12.03□□□□□ -0.48
SDCBPO00560 CTBP2P5-201ENST00000454986 1264 ntBASIC12.03□□□□□ -0.48
SDCBPO00560 PFN2-215ENST00000497148 743 ntTSL 4 BASIC12.03□□□□□ -0.48
SDCBPO00560 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC12.03□□□□□ -0.48
SDCBPO00560 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC12.03□□□□□ -0.48
SDCBPO00560 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC12.03□□□□□ -0.48
SDCBPO00560 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 AP006547.1-201ENST00000563435 692 ntBASIC12.03□□□□□ -0.48
SDCBPO00560 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC12.03□□□□□ -0.48
SDCBPO00560 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC12.03□□□□□ -0.48
SDCBPO00560 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
SDCBPO00560 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 NISCH-207ENST00000479054 5173 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 OR2C3-204ENST00000641802 8509 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
SDCBPO00560 IGFN1-201ENST00000295591 4439 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
SDCBPO00560 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 MTMR11-201ENST00000369140 2324 ntAPPRIS ALT2 TSL 2 BASIC12.03□□□□□ -0.48
SDCBPO00560 OS9-206ENST00000435406 2346 ntTSL 2 BASIC12.03□□□□□ -0.48
SDCBPO00560 TNFRSF21-201ENST00000296861 3595 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
SDCBPO00560 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
SDCBPO00560 NFKB1-202ENST00000394820 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
SDCBPO00560 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC12.02□□□□□ -0.48
SDCBPO00560 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
SDCBPO00560 APLP2-201ENST00000263574 3727 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
SDCBPO00560 EOGT-202ENST00000383701 4731 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
SDCBPO00560 TEX35-204ENST00000367642 2452 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.48
SDCBPO00560 TMUB2-215ENST00000592825 2151 ntTSL 3 BASIC12.02□□□□□ -0.48
SDCBPO00560 YWHAZ-206ENST00000395957 5248 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
SDCBPO00560 ZMYND10-201ENST00000231749 2896 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.48
SDCBPO00560 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
SDCBPO00560 ZNF862-201ENST00000223210 6950 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
SDCBPO00560 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
SDCBPO00560 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
SDCBPO00560 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.48
SDCBPO00560 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
SDCBPO00560 ABCD1P2-201ENST00000429313 1601 ntBASIC12.02□□□□□ -0.49
SDCBPO00560 LDB3-202ENST00000361373 5297 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
SDCBPO00560 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
SDCBPO00560 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
SDCBPO00560 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
SDCBPO00560 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
SDCBPO00560 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
SDCBPO00560 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
SDCBPO00560 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC12.02□□□□□ -0.49
SDCBPO00560 AC010141.1-201ENST00000411585 623 ntBASIC12.02□□□□□ -0.49
SDCBPO00560 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC12.02□□□□□ -0.49
SDCBPO00560 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC12.02□□□□□ -0.49
SDCBPO00560 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC12.02□□□□□ -0.49
SDCBPO00560 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
SDCBPO00560 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
SDCBPO00560 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC12.02□□□□□ -0.49
SDCBPO00560 KRT17P8-201ENST00000540749 863 ntBASIC12.02□□□□□ -0.49
SDCBPO00560 C2orf69P2-201ENST00000562032 1123 ntBASIC12.02□□□□□ -0.49
SDCBPO00560 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC12.02□□□□□ -0.49
SDCBPO00560 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
SDCBPO00560 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC12.02□□□□□ -0.49
SDCBPO00560 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC12.02□□□□□ -0.49
SDCBPO00560 LINC02084-201ENST00000606069 1096 ntBASIC12.02□□□□□ -0.49
SDCBPO00560 AC244453.2-201ENST00000457996 3543 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
SDCBPO00560 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
SDCBPO00560 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
SDCBPO00560 WHRN-201ENST00000265134 2847 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
SDCBPO00560 SLC6A2-201ENST00000219833 2858 ntTSL 5 BASIC12.02□□□□□ -0.49
SDCBPO00560 CCDC13-201ENST00000310232 2943 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
SDCBPO00560 HJURP-207ENST00000441687 2934 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.49
SDCBPO00560 COL1A2-213ENST00000620463 4523 ntTSL 5 BASIC12.02□□□□□ -0.49
SDCBPO00560 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
SDCBPO00560 DYNC1I1-201ENST00000324972 2950 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
SDCBPO00560 ACTN1-204ENST00000438964 3043 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
SDCBPO00560 DLGAP1-201ENST00000315677 6683 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
SDCBPO00560 UNK-205ENST00000589666 3925 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
SDCBPO00560 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC12.02□□□□□ -0.49
SDCBPO00560 SPG11-202ENST00000427534 6935 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
SDCBPO00560 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 KCNMA1-291ENST00000640834 3664 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
SDCBPO00560 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 PCDHB19P-202ENST00000625133 2914 ntBASIC12.01□□□□□ -0.49
SDCBPO00560 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
SDCBPO00560 TMEM57-201ENST00000374343 3917 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 ADGRG6-202ENST00000296932 6849 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 DMTF1-202ENST00000394703 4038 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
SDCBPO00560 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms