Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL20A1Q9P218 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL20A1Q9P218 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL20A1Q9P218 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL20A1Q9P218 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL20A1Q9P218 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
COL20A1Q9P218 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
COL20A1Q9P218 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
COL20A1Q9P218 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL20A1Q9P218 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL20A1Q9P218 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL20A1Q9P218 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
COL20A1Q9P218 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL20A1Q9P218 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC15.67■□□□□ 0.1
COL20A1Q9P218 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL20A1Q9P218 PAX5-204ENST00000377852 1472 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL20A1Q9P218 AF013593.1-201ENST00000458074 1487 ntBASIC15.67■□□□□ 0.1
COL20A1Q9P218 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL20A1Q9P218 NHP2-202ENST00000314397 599 ntTSL 2 BASIC15.67■□□□□ 0.1
COL20A1Q9P218 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL20A1Q9P218 AP000354.1-201ENST00000396982 456 ntBASIC15.67■□□□□ 0.1
COL20A1Q9P218 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL20A1Q9P218 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC15.67■□□□□ 0.1
COL20A1Q9P218 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC15.67■□□□□ 0.1
COL20A1Q9P218 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC15.67■□□□□ 0.1
COL20A1Q9P218 AC079250.1-201ENST00000456046 531 ntBASIC15.67■□□□□ 0.1
COL20A1Q9P218 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC15.67■□□□□ 0.1
COL20A1Q9P218 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC15.67■□□□□ 0.1
COL20A1Q9P218 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC15.67■□□□□ 0.1
COL20A1Q9P218 BAK1P2-201ENST00000532665 631 ntBASIC15.67■□□□□ 0.1
COL20A1Q9P218 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC15.67■□□□□ 0.1
COL20A1Q9P218 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL20A1Q9P218 AC068152.1-205ENST00000575173 1081 ntTSL 3 BASIC15.67■□□□□ 0.1
COL20A1Q9P218 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL20A1Q9P218 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC15.67■□□□□ 0.1
COL20A1Q9P218 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC15.67■□□□□ 0.1
COL20A1Q9P218 FO393412.1-201ENST00000619841 382 ntBASIC15.67■□□□□ 0.1
COL20A1Q9P218 STAG3L1-204ENST00000619870 1192 ntTSL 2 BASIC15.67■□□□□ 0.1
COL20A1Q9P218 AC244250.3-201ENST00000620749 366 ntBASIC15.67■□□□□ 0.1
COL20A1Q9P218 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
COL20A1Q9P218 MIR6746-201ENST00000620971 63 ntBASIC15.67■□□□□ 0.1
COL20A1Q9P218 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC15.67■□□□□ 0.1
COL20A1Q9P218 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
COL20A1Q9P218 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC15.67■□□□□ 0.1
COL20A1Q9P218 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
COL20A1Q9P218 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL20A1Q9P218 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC15.67■□□□□ 0.1
COL20A1Q9P218 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC15.67■□□□□ 0.1
COL20A1Q9P218 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL20A1Q9P218 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC15.67■□□□□ 0.1
COL20A1Q9P218 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL20A1Q9P218 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC15.67■□□□□ 0.1
COL20A1Q9P218 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
COL20A1Q9P218 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL20A1Q9P218 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC15.67■□□□□ 0.1
COL20A1Q9P218 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC15.67■□□□□ 0.1
COL20A1Q9P218 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL20A1Q9P218 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
COL20A1Q9P218 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC15.67■□□□□ 0.1
COL20A1Q9P218 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
COL20A1Q9P218 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL20A1Q9P218 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL20A1Q9P218 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL20A1Q9P218 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
COL20A1Q9P218 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL20A1Q9P218 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL20A1Q9P218 POLL-206ENST00000370172 2308 ntTSL 2 BASIC15.66■□□□□ 0.1
COL20A1Q9P218 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
COL20A1Q9P218 FAM90A21P-201ENST00000510875 1396 ntBASIC15.66■□□□□ 0.1
COL20A1Q9P218 FAM90A15P-201ENST00000514465 1395 ntBASIC15.66■□□□□ 0.1
COL20A1Q9P218 FAM90A6P-201ENST00000515148 1394 ntBASIC15.66■□□□□ 0.1
COL20A1Q9P218 FAM90A16P-201ENST00000526662 1395 ntBASIC15.66■□□□□ 0.1
COL20A1Q9P218 FAM90A9P-201ENST00000527940 1395 ntBASIC15.66■□□□□ 0.1
COL20A1Q9P218 FAM90A5P-201ENST00000528738 1395 ntBASIC15.66■□□□□ 0.1
COL20A1Q9P218 FAM90A14P-201ENST00000530386 1395 ntBASIC15.66■□□□□ 0.1
COL20A1Q9P218 FAM90A13P-201ENST00000534703 1395 ntBASIC15.66■□□□□ 0.1
COL20A1Q9P218 SLC7A8-214ENST00000621729 1371 ntTSL 5 BASIC15.66■□□□□ 0.1
COL20A1Q9P218 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC15.66■□□□□ 0.1
COL20A1Q9P218 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL20A1Q9P218 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL20A1Q9P218 STK3-218ENST00000617590 2485 ntTSL 5 BASIC15.66■□□□□ 0.1
COL20A1Q9P218 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
COL20A1Q9P218 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
COL20A1Q9P218 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC15.66■□□□□ 0.1
COL20A1Q9P218 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC15.66■□□□□ 0.1
COL20A1Q9P218 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC15.66■□□□□ 0.1
COL20A1Q9P218 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
COL20A1Q9P218 AC092903.1-201ENST00000466506 262 ntBASIC15.66■□□□□ 0.1
COL20A1Q9P218 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC15.66■□□□□ 0.1
COL20A1Q9P218 HNRNPA1P56-201ENST00000505767 954 ntBASIC15.66■□□□□ 0.1
COL20A1Q9P218 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC15.66■□□□□ 0.1
COL20A1Q9P218 PRSS55-203ENST00000522210 1005 ntTSL 2 BASIC15.66■□□□□ 0.1
COL20A1Q9P218 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC15.66■□□□□ 0.1
COL20A1Q9P218 ADSSL1-208ENST00000555674 520 ntTSL 3 BASIC15.66■□□□□ 0.1
COL20A1Q9P218 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC15.66■□□□□ 0.1
COL20A1Q9P218 AC095350.1-204ENST00000585405 616 ntTSL 5 BASIC15.66■□□□□ 0.1
COL20A1Q9P218 AC010632.2-201ENST00000588369 1224 ntBASIC15.66■□□□□ 0.1
COL20A1Q9P218 AC026120.2-201ENST00000617239 309 ntBASIC15.66■□□□□ 0.1
COL20A1Q9P218 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC15.66■□□□□ 0.1
COL20A1Q9P218 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms