Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 CCL25-202ENST00000315626 450 ntTSL 2 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 CICP12-201ENST00000455801 843 ntBASIC13.58□□□□□ -0.24
COL28A1Q2UY09 RN7SL846P-201ENST00000467429 292 ntBASIC13.58□□□□□ -0.24
COL28A1Q2UY09 RN7SL23P-201ENST00000484055 275 ntBASIC13.58□□□□□ -0.24
COL28A1Q2UY09 GCOM2-201ENST00000509133 1104 ntBASIC13.58□□□□□ -0.24
COL28A1Q2UY09 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 AC068831.5-201ENST00000557387 328 ntBASIC13.58□□□□□ -0.24
COL28A1Q2UY09 DUT-207ENST00000559416 635 ntTSL 2 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 USB1-205ENST00000561743 1135 ntTSL 3 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 AC007250.1-201ENST00000608934 338 ntBASIC13.58□□□□□ -0.24
COL28A1Q2UY09 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 AL359881.3-201ENST00000602640 1721 ntBASIC13.58□□□□□ -0.24
COL28A1Q2UY09 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 MX1-218ENST00000619682 1980 ntTSL 5 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 AC092135.3-201ENST00000624151 1846 ntBASIC13.57□□□□□ -0.24
COL28A1Q2UY09 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 HSPA7-201ENST00000445535 1927 ntBASIC13.57□□□□□ -0.24
COL28A1Q2UY09 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 NME6-208ENST00000435684 599 ntTSL 2 BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 VPS18-202ENST00000558474 873 ntTSL 3 BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 AL590235.1-201ENST00000564650 861 ntBASIC13.57□□□□□ -0.24
COL28A1Q2UY09 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 AL118522.1-201ENST00000611368 560 ntBASIC13.57□□□□□ -0.24
COL28A1Q2UY09 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 AC027601.5-201ENST00000624065 2482 ntBASIC13.57□□□□□ -0.24
COL28A1Q2UY09 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 LINC01230-201ENST00000625222 3017 ntBASIC13.57□□□□□ -0.24
COL28A1Q2UY09 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL28A1Q2UY09 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC13.57□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms