Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
LIG3P49916 PCDHA6-201ENST00000378126 3267 ntBASIC14.92□□□□□ -0.02
LIG3P49916 JADE1-209ENST00000511647 3560 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIG3P49916 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
LIG3P49916 AL645937.6-201ENST00000641122 3727 ntBASIC14.92□□□□□ -0.02
LIG3P49916 GLP1R-201ENST00000373256 3105 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIG3P49916 AL162431.2-201ENST00000358073 2424 ntTSL 2 BASIC14.92□□□□□ -0.02
LIG3P49916 RPL31-207ENST00000409711 2328 ntTSL 2 BASIC14.92□□□□□ -0.02
LIG3P49916 POC5-202ENST00000428202 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIG3P49916 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIG3P49916 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LIG3P49916 CNKSR3-204ENST00000479339 2023 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LIG3P49916 RANBP17-219ENST00000523189 4588 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIG3P49916 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.92□□□□□ -0.02
LIG3P49916 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC14.92□□□□□ -0.02
LIG3P49916 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 CDC20B-203ENST00000381375 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 KCNMA1-232ENST00000638306 3811 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
LIG3P49916 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 NCDN-201ENST00000356090 3433 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 ZNF200-205ENST00000431561 3348 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 CYTH1-203ENST00000585509 3315 ntTSL 5 BASIC14.91□□□□□ -0.02
LIG3P49916 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 SMYD4-201ENST00000305513 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 PER1-202ENST00000354903 3115 ntTSL 2 BASIC14.91□□□□□ -0.02
LIG3P49916 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC14.91□□□□□ -0.02
LIG3P49916 TMEM130-201ENST00000339375 3015 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 FAM214B-208ENST00000605244 3016 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
LIG3P49916 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 AP1B1-202ENST00000357586 4176 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
LIG3P49916 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.91□□□□□ -0.02
LIG3P49916 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC14.91□□□□□ -0.02
LIG3P49916 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 RBM15-203ENST00000602849 3368 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
LIG3P49916 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 ABCB8-202ENST00000358849 4683 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC14.91□□□□□ -0.02
LIG3P49916 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC14.91□□□□□ -0.02
LIG3P49916 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC14.91□□□□□ -0.02
LIG3P49916 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
LIG3P49916 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 AC100850.1-201ENST00000506768 649 ntBASIC14.91□□□□□ -0.02
LIG3P49916 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC14.91□□□□□ -0.02
LIG3P49916 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC14.91□□□□□ -0.02
LIG3P49916 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC14.91□□□□□ -0.02
LIG3P49916 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC14.91□□□□□ -0.02
LIG3P49916 AL358472.3-201ENST00000608147 415 ntBASIC14.91□□□□□ -0.02
LIG3P49916 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC14.91□□□□□ -0.02
LIG3P49916 AC005695.3-201ENST00000614522 232 ntBASIC14.91□□□□□ -0.02
LIG3P49916 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC14.91□□□□□ -0.02
LIG3P49916 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC14.91□□□□□ -0.02
LIG3P49916 PRPF40B-209ENST00000548825 3307 ntAPPRIS P2 TSL 5 BASIC14.91□□□□□ -0.02
LIG3P49916 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 ZNF792-201ENST00000404801 3888 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
LIG3P49916 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 HRC-201ENST00000252825 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 LOXL4-201ENST00000260702 3653 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 TNFRSF21-201ENST00000296861 3595 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 DTX1-201ENST00000257600 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 AGGF1P1-201ENST00000509500 2073 ntBASIC14.91□□□□□ -0.02
LIG3P49916 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 TRPV1-209ENST00000576351 2525 ntTSL 5 BASIC14.91□□□□□ -0.02
LIG3P49916 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIG3P49916 BAIAP3-203ENST00000421665 3875 ntTSL 2 BASIC14.91□□□□□ -0.02
LIG3P49916 FUT6-205ENST00000527106 2211 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 FAM76A-204ENST00000373954 3567 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 SYK-203ENST00000375751 4936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 AC102953.2-201ENST00000609755 3026 ntBASIC14.9□□□□□ -0.02
LIG3P49916 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC14.9□□□□□ -0.02
LIG3P49916 IKBKE-201ENST00000578328 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 COPS7B-223ENST00000611614 2468 ntTSL 3 BASIC14.9□□□□□ -0.02
LIG3P49916 TMPRSS13-202ENST00000445164 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC14.9□□□□□ -0.02
LIG3P49916 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 AC011700.1-201ENST00000610409 2627 ntBASIC14.9□□□□□ -0.02
LIG3P49916 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 MAMDC4-201ENST00000317446 3658 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 AC015712.2-201ENST00000560351 3688 ntTSL 2 BASIC14.9□□□□□ -0.02
LIG3P49916 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC14.9□□□□□ -0.02
LIG3P49916 LINC01301-202ENST00000506428 2444 ntTSL 2 BASIC14.9□□□□□ -0.02
LIG3P49916 RPS3-201ENST00000278572 907 ntTSL 3 BASIC14.9□□□□□ -0.02
LIG3P49916 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
LIG3P49916 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms