Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AKNA-203ENST00000312033 3334 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 Z97653.2-201ENST00000623057 1418 ntBASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 RHOH-219ENST00000614836 2114 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 CNTNAP2-207ENST00000628930 1944 ntTSL 2 BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 CD1A-201ENST00000289429 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 SLIRP-201ENST00000238688 394 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 SH3BGRL3-202ENST00000319041 768 ntTSL 2 BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 NPPB-201ENST00000376468 694 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 BTF3-202ENST00000380591 1237 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 CYCS-203ENST00000409764 799 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 GAPDHP29-201ENST00000429913 985 ntBASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 RN7SL47P-201ENST00000488710 299 ntBASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 MST1L-204ENST00000545160 559 ntTSL 4 BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 DSCR9-203ENST00000581640 472 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 MXRA7-204ENST00000585519 540 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 BX510359.7-201ENST00000619819 630 ntBASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 TMUB2-205ENST00000587172 1598 ntTSL 2 BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 TESPA1-201ENST00000316577 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 PRAMEF25-201ENST00000614839 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 PRAMEF26-201ENST00000624207 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 DRD2-204ENST00000538967 1493 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 RHPN1-AS1-201ENST00000518049 1918 ntBASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 ZNF397-209ENST00000591206 1516 ntTSL 2 BASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 AC097474.1-201ENST00000506481 1371 ntBASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 FSTL4-207ENST00000621681 2660 ntTSL 5 BASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 AC131011.1-201ENST00000366134 672 ntTSL 3 BASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 AC010677.1-201ENST00000441690 412 ntBASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 AC008021.1-201ENST00000474180 414 ntBASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 AADAC-202ENST00000488869 719 ntTSL 2 BASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 MYCBP-203ENST00000494695 750 ntTSL 2 BASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 RN7SL87P-201ENST00000497657 288 ntBASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 AC099343.1-201ENST00000513481 609 ntBASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 AC005096.1-201ENST00000560499 622 ntTSL 3 BASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 AC127496.3-201ENST00000576032 494 ntTSL 3 BASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 NAP1L1-226ENST00000552342 1526 ntTSL 5 BASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHANK3Q9BYB0 TBC1D8B-202ENST00000310452 2589 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
SHANK3Q9BYB0 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
SHANK3Q9BYB0 TMPRSS4-213ENST00000522824 2052 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
SHANK3Q9BYB0 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
SHANK3Q9BYB0 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 ZFAND1-201ENST00000220669 1798 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 ZFAND1-221ENST00000523096 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 TIMP1-201ENST00000218388 892 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 TAMM41-201ENST00000273037 1297 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 SMIM4-201ENST00000307106 274 ntTSL 2 BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 PCP2-201ENST00000311069 776 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 TIMP1-202ENST00000377017 626 ntTSL 2 BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 SUMO1-202ENST00000392245 1071 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 PIGL-202ENST00000395844 1257 ntTSL 5 BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 AL121949.1-201ENST00000402043 968 ntBASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 AC026884.1-201ENST00000418296 457 ntBASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 ACTG1P23-201ENST00000437653 1074 ntBASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 POU5F1-202ENST00000441888 1055 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 VPS33A-202ENST00000451053 1154 ntTSL 3 BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 AC008808.2-201ENST00000510349 569 ntTSL 3 BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 AC027682.3-201ENST00000564717 207 ntTSL 5 BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 MIR4539-201ENST00000579784 60 ntBASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 AC100778.4-201ENST00000581232 582 ntTSL 4 BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 SMIM11B-202ENST00000619874 843 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 FMR1-218ENST00000621447 1832 ntTSL 3 BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 TTC39A-204ENST00000371750 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 ST3GAL3-202ENST00000330208 1479 ntTSL 5 BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 DDX11L1-202ENST00000456328 1657 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 DDX11L10-202ENST00000513886 1652 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 MCRS1-203ENST00000546244 1686 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 DDX11L9-203ENST00000562189 1652 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC17.39■□□□□ 0.37
SHANK3Q9BYB0 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms