Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
CCDC88AQ3V6T2 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC88AQ3V6T2 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC88AQ3V6T2 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
CCDC88AQ3V6T2 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC88AQ3V6T2 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC88AQ3V6T2 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC88AQ3V6T2 EDEM2-201ENST00000374491 1756 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC88AQ3V6T2 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
CCDC88AQ3V6T2 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC88AQ3V6T2 PLA2G1B-202ENST00000423423 423 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC88AQ3V6T2 HNRNPA1P73-201ENST00000446472 928 ntBASIC16.73■□□□□ 0.27
CCDC88AQ3V6T2 RNF7-205ENST00000480908 782 ntTSL 4 BASIC16.73■□□□□ 0.27
CCDC88AQ3V6T2 IGKV3-11-201ENST00000483158 392 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
CCDC88AQ3V6T2 AC104117.4-201ENST00000521486 847 ntBASIC16.73■□□□□ 0.27
CCDC88AQ3V6T2 DLX6-203ENST00000555308 666 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
CCDC88AQ3V6T2 AC018845.3-201ENST00000562536 516 ntTSL 3 BASIC16.73■□□□□ 0.27
CCDC88AQ3V6T2 HMOX2-213ENST00000575120 1027 ntTSL 3 BASIC16.73■□□□□ 0.27
CCDC88AQ3V6T2 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC16.73■□□□□ 0.27
CCDC88AQ3V6T2 STAG3L1-204ENST00000619870 1192 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC88AQ3V6T2 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC88AQ3V6T2 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC16.73■□□□□ 0.27
CCDC88AQ3V6T2 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC88AQ3V6T2 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC88AQ3V6T2 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC88AQ3V6T2 DAO-208ENST00000551281 1345 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 AC023908.3-201ENST00000564211 3047 ntBASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 NRADDP-202ENST00000641269 1585 ntBASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 OSCP1-201ENST00000235532 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 OSCP1-203ENST00000356637 1463 ntTSL 5 BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 WNT8A-202ENST00000398754 1498 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 SERHL2-201ENST00000327678 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 OR51B5-201ENST00000300773 939 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 NANOS3-201ENST00000339133 581 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 VKORC1-203ENST00000354895 901 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 TXLNGY-202ENST00000407724 1000 ntTSL 3 BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 AL357833.1-201ENST00000413993 832 ntTSL 3 BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 HNRNPA3P12-201ENST00000437410 1063 ntBASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 AP000959.1-201ENST00000441759 977 ntTSL 3 BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 AL358215.1-201ENST00000481350 482 ntTSL 5 BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 SEPT14P19-201ENST00000587432 336 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 ZNF850-201ENST00000589390 523 ntTSL 3 BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 AC134878.2-201ENST00000620700 1265 ntBASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 AC079331.1-201ENST00000623200 1200 ntBASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 AC012594.1-273ENST00000626618 816 ntTSL 5 BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 AL121753.2-201ENST00000624581 1461 ntBASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 AC005089.1-201ENST00000619486 2241 ntBASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 DNAJB6-204ENST00000429029 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 CLP1-202ENST00000525602 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC88AQ3V6T2 LINC00675-202ENST00000581851 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 RIDA-201ENST00000254878 1057 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 KLK8-203ENST00000347619 555 ntTSL 2 BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 CHEK2-203ENST00000382565 696 ntTSL 5 BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 CRIP1P2-201ENST00000425396 228 ntBASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 RFNG-202ENST00000429557 994 ntTSL 5 BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 AC078882.1-201ENST00000436132 416 ntTSL 2 BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 ARHGEF26-AS1-203ENST00000480639 582 ntTSL 2 BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 IQSEC2-205ENST00000498281 673 ntTSL 3 BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 CTB-178M22.2-201ENST00000519795 503 ntTSL 4 BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 SMIM28-201ENST00000573100 855 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 RN7SL134P-201ENST00000579756 303 ntBASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 RN7SL480P-201ENST00000581481 294 ntBASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 TUBB4A-207ENST00000596926 548 ntTSL 4 BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 AL356740.1-201ENST00000602192 1297 ntBASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 AL035427.1-201ENST00000602441 387 ntTSL 3 BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 MCRS1-203ENST00000546244 1686 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 XRN1-203ENST00000463916 2075 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 OR6D1P-203ENST00000641209 4860 ntBASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 KRT8P42-201ENST00000405771 1399 ntBASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC88AQ3V6T2 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms