Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CLRN1P58418 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC12.63□□□□□ -0.39
CLRN1P58418 TNS1-205ENST00000419504 5921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CLRN1P58418 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC12.63□□□□□ -0.39
CLRN1P58418 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC12.63□□□□□ -0.39
CLRN1P58418 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CLRN1P58418 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC12.63□□□□□ -0.39
CLRN1P58418 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CLRN1P58418 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC12.63□□□□□ -0.39
CLRN1P58418 STK26-204ENST00000481105 1835 ntTSL 2 BASIC12.63□□□□□ -0.39
CLRN1P58418 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CLRN1P58418 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CLRN1P58418 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CLRN1P58418 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CLRN1P58418 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
CLRN1P58418 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CLRN1P58418 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CLRN1P58418 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CLRN1P58418 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC12.63□□□□□ -0.39
CLRN1P58418 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC12.63□□□□□ -0.39
CLRN1P58418 EIF4HP1-201ENST00000453115 687 ntBASIC12.63□□□□□ -0.39
CLRN1P58418 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CLRN1P58418 RN7SL530P-201ENST00000485097 298 ntBASIC12.63□□□□□ -0.39
CLRN1P58418 MARK2P5-201ENST00000507649 634 ntBASIC12.63□□□□□ -0.39
CLRN1P58418 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC12.63□□□□□ -0.39
CLRN1P58418 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC12.63□□□□□ -0.39
CLRN1P58418 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CLRN1P58418 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CLRN1P58418 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC12.63□□□□□ -0.39
CLRN1P58418 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC12.63□□□□□ -0.39
CLRN1P58418 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC12.63□□□□□ -0.39
CLRN1P58418 AL022328.3-201ENST00000607943 679 ntBASIC12.63□□□□□ -0.39
CLRN1P58418 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC12.63□□□□□ -0.39
CLRN1P58418 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC12.63□□□□□ -0.39
CLRN1P58418 MIR6752-201ENST00000618442 71 ntBASIC12.63□□□□□ -0.39
CLRN1P58418 CR392039.2-201ENST00000623182 509 ntBASIC12.63□□□□□ -0.39
CLRN1P58418 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC12.63□□□□□ -0.39
CLRN1P58418 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC12.63□□□□□ -0.39
CLRN1P58418 RCC2P1-201ENST00000452257 1476 ntBASIC12.63□□□□□ -0.39
CLRN1P58418 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC12.63□□□□□ -0.39
CLRN1P58418 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC12.63□□□□□ -0.39
CLRN1P58418 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CLRN1P58418 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CLRN1P58418 SCOC-210ENST00000608372 5129 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CLRN1P58418 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC12.63□□□□□ -0.39
CLRN1P58418 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CLRN1P58418 ARSD-202ENST00000381154 5159 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CLRN1P58418 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CLRN1P58418 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CLRN1P58418 ANKRD36B-204ENST00000438709 6067 ntTSL 5 BASIC12.63□□□□□ -0.39
CLRN1P58418 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC12.63□□□□□ -0.39
CLRN1P58418 GOLGA7B-203ENST00000596005 6378 ntTSL 2 BASIC12.63□□□□□ -0.39
CLRN1P58418 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CLRN1P58418 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
CLRN1P58418 KREMEN1-202ENST00000400335 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CLRN1P58418 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CLRN1P58418 SYMPK-214ENST00000599814 6537 ntTSL 2 BASIC12.62□□□□□ -0.39
CLRN1P58418 RBP3-201ENST00000584701 4276 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC12.62□□□□□ -0.39
CLRN1P58418 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC12.62□□□□□ -0.39
CLRN1P58418 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 SLC4A7-203ENST00000425128 7970 ntTSL 5 BASIC12.62□□□□□ -0.39
CLRN1P58418 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
CLRN1P58418 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
CLRN1P58418 BTRC-202ENST00000370187 6134 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 GSE1-201ENST00000253458 7495 ntAPPRIS P3 TSL 5 BASIC12.62□□□□□ -0.39
CLRN1P58418 MYO7A-202ENST00000409709 7462 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 TECTA-201ENST00000264037 6468 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC12.62□□□□□ -0.39
CLRN1P58418 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 TROVE2-208ENST00000432079 7848 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
CLRN1P58418 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC12.62□□□□□ -0.39
CLRN1P58418 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 ARHGAP21-217ENST00000612832 5514 ntTSL 5 BASIC12.62□□□□□ -0.39
CLRN1P58418 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
CLRN1P58418 KRT8P21-201ENST00000430398 1491 ntBASIC12.62□□□□□ -0.39
CLRN1P58418 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 OARD1-204ENST00000464633 717 ntTSL 2 BASIC12.62□□□□□ -0.39
CLRN1P58418 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC12.62□□□□□ -0.39
CLRN1P58418 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC12.62□□□□□ -0.39
CLRN1P58418 MIR3188-201ENST00000583494 85 ntBASIC12.62□□□□□ -0.39
CLRN1P58418 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
CLRN1P58418 NAP1L6-202ENST00000641404 1222 ntBASIC12.62□□□□□ -0.39
CLRN1P58418 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
CLRN1P58418 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CLRN1P58418 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
CLRN1P58418 CACNA2D2-205ENST00000429770 5304 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms