Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AP006547.1-201ENST00000563435 692 ntBASIC11.63□□□□□ -0.55
CDX1P47902 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC11.63□□□□□ -0.55
CDX1P47902 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CDX1P47902 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC11.63□□□□□ -0.55
CDX1P47902 PPY2P-201ENST00000582808 702 ntBASIC11.63□□□□□ -0.55
CDX1P47902 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CDX1P47902 CYGB-203ENST00000589145 788 ntTSL 3 BASIC11.63□□□□□ -0.55
CDX1P47902 KLK3-211ENST00000597483 810 ntTSL 2 BASIC11.63□□□□□ -0.55
CDX1P47902 AC004466.1-201ENST00000599515 1080 ntBASIC11.63□□□□□ -0.55
CDX1P47902 AC073413.1-201ENST00000603927 732 ntBASIC11.63□□□□□ -0.55
CDX1P47902 DIO1-215ENST00000610607 796 ntTSL 5 BASIC11.63□□□□□ -0.55
CDX1P47902 DSE-201ENST00000331677 7237 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
CDX1P47902 C9orf106-201ENST00000316786 3145 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CDX1P47902 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
CDX1P47902 PID1-204ENST00000409462 2387 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CDX1P47902 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
CDX1P47902 TJAP1-201ENST00000259751 2720 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
CDX1P47902 NR1H3-217ENST00000467728 2731 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CDX1P47902 FANCC-210ENST00000490972 2709 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CDX1P47902 AC004834.1-202ENST00000638785 1737 ntTSL 5 BASIC11.63□□□□□ -0.55
CDX1P47902 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CDX1P47902 MYCBP-201ENST00000397572 2818 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CDX1P47902 AC022497.1-201ENST00000624916 3691 ntBASIC11.63□□□□□ -0.55
CDX1P47902 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CDX1P47902 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
CDX1P47902 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
CDX1P47902 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC11.62□□□□□ -0.55
CDX1P47902 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
CDX1P47902 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC11.62□□□□□ -0.55
CDX1P47902 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC11.62□□□□□ -0.55
CDX1P47902 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
CDX1P47902 CACNA1G-203ENST00000358244 7030 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 INTS13-201ENST00000261191 2974 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 TRPM5-201ENST00000155858 3929 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 SLC37A4-202ENST00000357590 2356 ntTSL 5 BASIC11.62□□□□□ -0.55
CDX1P47902 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 H3F3B-201ENST00000254810 2705 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 CTCFL-218ENST00000608440 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC11.62□□□□□ -0.55
CDX1P47902 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 TCAM1P-207ENST00000485295 1537 ntBASIC11.62□□□□□ -0.55
CDX1P47902 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC11.62□□□□□ -0.55
CDX1P47902 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 AL031719.1-201ENST00000623365 2587 ntBASIC11.62□□□□□ -0.55
CDX1P47902 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC11.62□□□□□ -0.55
CDX1P47902 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC11.62□□□□□ -0.55
CDX1P47902 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC11.62□□□□□ -0.55
CDX1P47902 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC11.62□□□□□ -0.55
CDX1P47902 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC11.62□□□□□ -0.55
CDX1P47902 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 MIR4525-201ENST00000580000 75 ntBASIC11.62□□□□□ -0.55
CDX1P47902 MIR4538-201ENST00000581377 78 ntBASIC11.62□□□□□ -0.55
CDX1P47902 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 ARFIP2-210ENST00000614314 3846 ntTSL 2 BASIC11.62□□□□□ -0.55
CDX1P47902 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC11.62□□□□□ -0.55
CDX1P47902 TNK1-201ENST00000570896 3122 ntAPPRIS P3 TSL 5 BASIC11.62□□□□□ -0.55
CDX1P47902 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC11.62□□□□□ -0.55
CDX1P47902 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
CDX1P47902 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 MKNK1-201ENST00000341183 2612 ntTSL 5 BASIC11.62□□□□□ -0.55
CDX1P47902 AC024075.2-201ENST00000598112 1473 ntBASIC11.62□□□□□ -0.55
CDX1P47902 SLC38A7-215ENST00000570101 4549 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC11.62□□□□□ -0.55
CDX1P47902 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC11.62□□□□□ -0.55
CDX1P47902 TRMT61A-202ENST00000389749 3229 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
CDX1P47902 PDZD4-209ENST00000544474 3418 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 TOX2-203ENST00000372999 2519 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CDX1P47902 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
CDX1P47902 LLGL1-203ENST00000621229 3187 ntTSL 5 BASIC11.61□□□□□ -0.55
CDX1P47902 THSD7A-205ENST00000617773 10583 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
CDX1P47902 ZNF862-201ENST00000223210 6950 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
CDX1P47902 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms