Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 LARP4-220ENST00000615080 856 ntTSL 5 BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 BAP1-211ENST00000615113 489 ntBASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 NECAP2-202ENST00000443980 1929 ntTSL 2 BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 STK25-235ENST00000543554 2556 ntTSL 2 BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 TCF23-201ENST00000296096 4882 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 TBC1D13-202ENST00000372648 3906 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 NCSTN-202ENST00000368063 3031 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 APLP2-201ENST00000263574 3727 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 DSE-201ENST00000331677 7237 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 ZNF683-205ENST00000436292 1712 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 SEZ6L-203ENST00000360929 6307 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 FANCC-201ENST00000289081 4585 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 NOX5-202ENST00000388866 2804 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
DEPDC4Q8N2C3 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 PTK2-202ENST00000395218 4415 ntTSL 5 BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 BX324167.2-201ENST00000623717 3316 ntBASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 BIRC5-202ENST00000350051 2630 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 LINC00865-202ENST00000448963 4272 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 TBC1D24-201ENST00000293970 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 DHX34-201ENST00000328771 4372 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 AL512274.1-201ENST00000562471 2027 ntBASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 RBL1-202ENST00000373664 5684 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 GNG12-AS1-201ENST00000413628 2058 ntTSL 2 BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 AP000437.1-201ENST00000624057 2085 ntBASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 RNU1-114P-201ENST00000365297 166 ntBASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 EIF4G1-207ENST00000411531 4683 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 RPL7P3-201ENST00000441388 714 ntBASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 FTH1P14-201ENST00000482930 551 ntBASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 RPSAP52-203ENST00000622976 1023 ntBASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 DSCAML1-203ENST00000527706 6099 ntTSL 5 BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 TMEM121B-202ENST00000399875 3961 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 GPRASP1-202ENST00000415986 5877 ntAPPRIS P1 TSL 4 BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 RAB6B-201ENST00000285208 5526 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
DEPDC4Q8N2C3 SH3PXD2B-201ENST00000311601 7777 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 PCDHB18P-202ENST00000526308 3197 ntBASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 PLXNA1-201ENST00000393409 9066 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 DLX4-206ENST00000611342 1662 ntBASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 ACTN1-204ENST00000438964 3043 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 TP73-203ENST00000357733 4899 ntTSL 5 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 STK3-218ENST00000617590 2485 ntTSL 5 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC13.28□□□□□ -0.28
DEPDC4Q8N2C3 EIF3FP3-201ENST00000434851 1086 ntBASIC13.28□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 358 ms